RNA id: TCONS_00055614


Basic Information

Item Value
RNA id TCONS_00055614
length 1815
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_028685
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16828752 ~ 16836006 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGATCATGGCCTCAGTAATGCAGAAGCTGATCACTCCTCTGGCCAGCGGCCCTGCTGAGCCCCCCAGGAACAAGGTTACTATTGTTGGCGTGGGGCAGGTGGGCATGGCCTGTGCCGTCAGCGTACTGCTTCGGGAACTTGCAGATGAACTGGCTCTGGTTGATGTTGTGGAGGACCGACTGAAGGGAGAGATGCTGGATCTGCAGCATGGCAGCCTTTTCCTCAAGACGCCCAAGATTGTGGCTGACAAGGACTACTCTGTGACCGCTAACTCTCGTATTGTGGTGGTGACGGCTGGAGTGCGTCAGCAGGAGGGTGAGAGCAGACTGAACCTGGTGCAGAGGAACGTCAACATTTTCAAGCACATCATCCCTCAGATTGTCAAATACAGTCCTGACTGCATTCTCGTCGTGGTGTCCAATCCAGTGGACGTTCTGACCTATGTGACCTGGAAGTTGAGTGGCCTGCCAAAGCACCGTGTCATTGGCAGTGGGACCAACCTGGACTCCGCCCGCTTCCGCTACATCATGGCAGAGAAGCTGGGCATCCACGCCAGCAGCTTCAATGGATACATTCTGGGAGAACACGGAGACACCAGCGttCCCGTATGGAGTGGTGCAAATGTGGCTGGTGTCAGCCTGCAGAAACTCAATCCTGACATCGGCACAGATAAAGATGCTGAAAACTGGAAGGAAGCTCACAAGATGGTTGTGGACAGTGCCTATGAAGTGATCAAGCTGAAGGGATACACCAACTGGGCCATCGGCCTCAGTGTGGCTGACCTGACAGAGACCCTGGTGAAGAACCTGAACAGAGTCCACCCCGTGTCCACTATGGTGAAGGGCATGTATGGCATCAACGAGGAGGTTTACCTGAGTTTGCCCTGTGTGCTGAACAGCAGCGGTGTGGGCAGCGTCATTAACATGACCCTGACCGATGGAGAAATCGGCCAGCTGAAGAGCAGCGCAGACACTCTCTGGGGCATCCAGAAAGACCTGAAAGACCTGTAGATCAGTCATGGGCACCCACTTTTCCTTTCCATAACTCCATTCACACTCCTTCACTATCTTTGCACACACTCTGAAATCGGCTCTGTCATTTCTTCTCACTTGCTTTTGGATATGTTTgctttgaagtgttttttttccagTGGTGTTTTAAAGTAGGCATTGTAATCAAAAATGTGGAATGTTCCTTCTTGTAAAGCGAATGATCAAAGGGAGCATCTTTGAACTTGTGTGGGCAATGAAGAAAGAAGCAACACCTCTCTTATGTCTGGACATAATTTAGCAAGATCATTAGGGGACGTTCTTGTGTCTTTGTGTTTAAGTCAAGAGGAGAAGAAACTGAAGTGTGGTCCATACAAATGTATTCATTCTTCTGAATCGTGCTGTAAGTGTTGGTCATGTTGATGAGGGTGTGTGTAAGAtgaaatttaataaactaatgaACCAGTTCAAATCTcttcagttttgatttttttttctttcttttttcccggGTAGTGACAATTTGAACCATGTGGTAAAAGCCTTTAATTAAATTAggcttaaatgtaaaatgaatgctTTATTTTGAACAATAGTTGGACTAGTTAGTTGACTCACTATATGTTATGGCCAGAAAAATTATATTACATCCGGTTAGAATAAAGTTTCAACCTTAGTATTTATTGTAATTACACTCATGTATAGATGGATAAAttatacagtaattttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattattattattatttttttttttttgcagtaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991026-6 Predicted to enable L-lactate dehydrogenase activity. Predicted to act upstream of or within carbohydrate metabolic process and carboxylic acid metabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including alar plate midbrain region; musculature system; nervous system; pronephric duct; and yolk syncytial layer. Orthologous to human LDHB (lactate dehydrogenase B).

Ensembl:

ensembl_id ENSDART00000179867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058180 lncRNA downstream 42002 16773010 ~ 16786750 (-) False XLOC_028684
TCONS_00058181 lncRNA downstream 44318 16779023 ~ 16784434 (-) False XLOC_028684
TCONS_00058179 lncRNA downstream 50878 16773010 ~ 16777874 (-) False XLOC_028684
TCONS_00058177 lncRNA downstream 51063 16763705 ~ 16777689 (-) False XLOC_028684
TCONS_00058178 lncRNA downstream 51105 16773010 ~ 16777647 (-) False XLOC_028684
TCONS_00057347 lncRNA upstream 279861 17113379 ~ 17216173 (-) False XLOC_028690
TCONS_00055626 lncRNA upstream 332126 17165644 ~ 17182108 (-) False XLOC_028690
TCONS_00055627 lncRNA upstream 347927 17181445 ~ 17216198 (-) False XLOC_028690
TCONS_00057348 lncRNA upstream 348066 17181584 ~ 17216173 (-) False XLOC_028690
TCONS_00058182 lncRNA upstream 373609 17207127 ~ 17216223 (-) True XLOC_028690
TCONS_00055611 mRNA downstream 4196 16783972 ~ 16824556 (-) False XLOC_028684
TCONS_00055612 mRNA downstream 4196 16788652 ~ 16824556 (-) False XLOC_028684
TCONS_00055613 mRNA downstream 4521 16800299 ~ 16824231 (-) True XLOC_028684
TCONS_00055607 mRNA downstream 121774 16649542 ~ 16706978 (-) False XLOC_028683
TCONS_00055610 mRNA downstream 121774 16680460 ~ 16706978 (-) True XLOC_028683
TCONS_00055616 mRNA upstream 11455 16844973 ~ 16853464 (-) False XLOC_028686
TCONS_00055617 mRNA upstream 11455 16844973 ~ 16853474 (-) True XLOC_028686
TCONS_00055620 mRNA upstream 24204 16857722 ~ 16876281 (-) False XLOC_028687
TCONS_00055619 mRNA upstream 24204 16857722 ~ 16876281 (-) False XLOC_028687
TCONS_00055618 mRNA upstream 24204 16857722 ~ 16876281 (-) False XLOC_028687
TCONS_00055587 other downstream 615212 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 820585 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 1069079 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 2084061 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 2383977 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 423842 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 893868 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 902925 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1082414 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1165999 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

//