RNA id: TCONS_00055616


Basic Information

Item Value
RNA id TCONS_00055616
length 1375
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_028686
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 16844973 ~ 16853474 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGTCCATGCACCCAGTGCATTACAACCAACAACAAACCCTGGTAAAAATGTACCCAAACACTCTAACACAGTTGGCACGGTCGAATCCTTTCCAGGCTCCGCTTTTTTCCATTAAAACAGACCAGCAGCATGAGAAACAGCAGACAAAGCGCAAACTTGCTGCAGCATCTTATGACGATGCTGAAGTGAGCTGTGAATATGGCTCAAATAAATATTACGCCCTCTGCGGTTTTGGTGGGATTTTGAGCTGCGGCCTCACACACACAGCAGTCGTGCCCCTCGACCTTATTAAATGCCGCATCCAGGTGGACCCAGAGAAGTACAAGTCCATCTTCAATGGTTTCTCGGTCACTTTGAGAGAGGATGGTTTCAGAGGGCTGGGTAAAGGCTGGGCTCCTACATTCATCGGTTACTCCATGCAAGGGCTCTGCAAGTTTGGTTTCTATGAAATCTTTAAGGCGCTGTACAATGACATGCTCGGAGAGGAGAATGCTTATTTGTGGAGGACATCCGTTTATCTGGCCGCCTCTGCCAGCGCTGAGTTTTTCGCTGATATTGCACTGGCTCCTATGGAAGCGTGCAAGGTGCGAATTCAGACGCAGCCCGGCTACGCCAACACCCTGAGAGAGTGCGCTCCAAAAATGCATGCCGAGGAGGGACTGAATGCCTTCTATAAAGGTGTTTATCCGCTGTGGCTGAGGCAGATTCCTTACACCATGATGAAGTTTGCTTGTTTCGAGCGAACGGTGGAAACTCTGTACAAGTACGTCGTACCCAAACCCCGCAGTGAGTGCTCCAAACCAGAGCAGCTGGTGGTCACGTTCGTCGCCGGTTACATTGCTGGGGTGTTCTGTGCGGTGGTTTCTCATCCCGCTGACTCGGTGGTGTCGGTACTGAACAAAGAGAAGGGCAGTTCAGCTGTTGAGGTGCTGAAAAGACTGGGGCCCGTAGGCGTGTGGAAGGGTCTGTTCGCGAGGATCATCATGATCGGGACGCTGACGGCCCTGCAGTGGTTCATCTACGACTCGGTGAAGGTTTACTTCCGCCTGCCGCGTCCTCCACCACCAGACATGCCCGAGTCCCTCAAGAGGAAGATGGGGCTGCTGGACTACTAGACTCCTGAGGAACTGCACAAAACTCACAGGGCTTTCCACATTCaccaggcacacacacacacacacactggtgacTTTCTCTGCTGCTGTTTGTCTGTATTAGGGAAAAGCACACATCTGTCCCTTTTATGTGATTTCTGTGTGTTTCGTCTCTCCTTTGGTGAATGTTGGACTGAATATTTAAACTAAATCATATTTAGTGGCCCAAATTAGTACCTTTTCAATAACATTTCTTCAATAAACTAAAGAATAAAATCA

Function

GO:

id name namespace
GO:0035435 phosphate ion transmembrane transport biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005315 inorganic phosphate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1673 Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in several structures, including alar plate midbrain region; musculature system; optic vesicle; pronephric duct; and visual system. Orthologous to human SLC25A3 (solute carrier family 25 member 3).

Ensembl:

ensembl_id ENSDART00000125743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058180 lncRNA downstream 58223 16773010 ~ 16786750 (-) False XLOC_028684
TCONS_00058181 lncRNA downstream 60539 16779023 ~ 16784434 (-) False XLOC_028684
TCONS_00058179 lncRNA downstream 67099 16773010 ~ 16777874 (-) False XLOC_028684
TCONS_00058177 lncRNA downstream 67284 16763705 ~ 16777689 (-) False XLOC_028684
TCONS_00058178 lncRNA downstream 67326 16773010 ~ 16777647 (-) False XLOC_028684
TCONS_00057347 lncRNA upstream 259915 17113379 ~ 17216173 (-) False XLOC_028690
TCONS_00055626 lncRNA upstream 312180 17165644 ~ 17182108 (-) False XLOC_028690
TCONS_00055627 lncRNA upstream 327981 17181445 ~ 17216198 (-) False XLOC_028690
TCONS_00057348 lncRNA upstream 328120 17181584 ~ 17216173 (-) False XLOC_028690
TCONS_00058182 lncRNA upstream 353663 17207127 ~ 17216223 (-) True XLOC_028690
TCONS_00055615 mRNA downstream 8967 16829104 ~ 16836006 (-) True XLOC_028685
TCONS_00055614 mRNA downstream 11455 16828752 ~ 16833518 (-) False XLOC_028685
TCONS_00055611 mRNA downstream 20417 16783972 ~ 16824556 (-) False XLOC_028684
TCONS_00055612 mRNA downstream 20417 16788652 ~ 16824556 (-) False XLOC_028684
TCONS_00055613 mRNA downstream 20742 16800299 ~ 16824231 (-) True XLOC_028684
TCONS_00055620 mRNA upstream 4258 16857722 ~ 16876281 (-) False XLOC_028687
TCONS_00055619 mRNA upstream 4258 16857722 ~ 16876281 (-) False XLOC_028687
TCONS_00055618 mRNA upstream 4258 16857722 ~ 16876281 (-) False XLOC_028687
TCONS_00055622 mRNA upstream 4258 16857722 ~ 16876336 (-) False XLOC_028687
TCONS_00055621 mRNA upstream 4258 16857722 ~ 16876336 (-) True XLOC_028687
TCONS_00055587 other downstream 631433 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 836806 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 1085300 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 2100282 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 2400198 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 403896 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 873922 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 882979 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 1062468 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 1146053 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

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