RNA id: TU2416904


Basic Information

Item Value
RNA id TU2416904
length 2434
RNA type TUCP
GC content 0.51
exon number 1
gene id G2113520
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19007232 ~ 19011635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacattttgttatttcaaATGGATACAAAAAAAATGCAATGAACTGGTAGGCTGCTGGCTGCTGTTTAACTGTATTTTCCTTTTGAACACCTATGCGATAATACAACCCTCTCCATCTTTTCTCTGTGAGGCACTAAGGCACTGTACTACTCACTACCTTCCCTCCCATTACAAGTGCTAGCATATAAAATAACTGACAGGGAGAACAGAGACTTGAAGTGATGTCATGCTTTAGTTCATATAGGCTACTTAGCCAACATATAACGACTTGAACCAAAGGCAGATTCTGGAAGAATTTAAATGTTCCAAAAAGACCCACATTAAAATCAGAATAGAACAATCTTTCTCTCCAAATCCATCAATCCTTATTGAATGCAAGTTTACCACCACACCATTTAAATATGTGGTTTTCTTTCTTTAAAAGTTAGAGACTAGTCTTGTGTGCAAAATACCACCCTCTGAAAATTCTGGATTCTATTCTTTGCTGAGAAACTAGTTAGGATATTTGCGCGGGTTCTCAAACCCCTAAAGGACATTTGGAAGGTATTACAAATTGGTGAAAAACTCAACCCTTTGGATTTCTGGAATCTTTACTGTAGTGAGATAAACAAAGCATTGTCTTGGTCCTCTCTCTGTCATGTCAATCAGTTTTGTCTGCTTCAGAGGAGTGGGGGGCTGCATACTTCAGCCGAAAgccacctgaaacacacacacacacacaggagtgcGTCAGTGTCGCGTGCCAAACTAGCCAACAAGTAACATAAAGAAACGTGATGACCATAGTCTTTATGCTAGCCTTCCAGATTCAGTGTCCTATCAAAAGATGATTTAATACTTGGTTGGGTGTTTAATAGAGCTCTTTAGAACGTTCAGACAATCCAGGATTTGCTACAGAGAGCGTCAGACATAAAAATGGTGGACAGTGCAAAACATGGTGGGGACAAAAAAAGTTACAAAAGAAAGCTCTGCCTTCCTATACAACATTTGATTTTGCTCAAACAAAAGATAAATCCTTCTTTTCTCTGCTCTATCAATATGAGAGacttcacctcctctctctgccactaGCCTGGCCAGTATTACCTTGCTGCCCGGCATCCATTGAGGGCTGCTTGCAGTCCTGGGCATAGTGCCCGCTGAGCCCACAGTTATAGCAGGAGACGTTGGCACTACTCTTCTTCATGCCCGTGCCCAGTCCCACCGAGGAGAACACGGGTGTGTAGAAACGGTTGAATGAAGCAGCTGCCATCTGCTGCAGGGTGTATCCAGCCTGGGTGGCCAGCatgtggtctgagtgggaggtaTGGAGCAGGGGTCCACTGACGTATTGTGTTGGCGTGGCTGTGTGAGGAGGGGGATAGAAGGGTAGCTGTGTGGTGCCGTTGCTCTGGTGTTGGACCTGACTGCGGTGGCTGGGATATCCAGTGCTGCACATGGATgggaggtggaagagagggaggtgagcgGCGCTGAAGACCTGGCGCCCCAGCTGGGGAGGGAAGTAGAAGTTGGGGTTGGGGGAGTGGCTACTACCACAGCTGCCATGGCAACCGCAGGTGCTGCAGCTCATCTGCTGTTGCTGTGGAGGTTGGGTCTGCTGCTGGGGTTGCAGCTTTTGCTGGGCCTGCCCTGCTGCCTCCCCCGAGCTGCTGCAAGAAGAGGTGCCGTCTCCCTGGGCCGTGCTGTGGGTGAGGGTCAGGGCTTGGCTGGACACGGGGCCGGGGGTGTGAGTGGGGATGGCTGGGAGCAGAGTGGCCTGAACCTGACTGATGGCAACTGGGGTCACAGTTGCCCCGGAGGAGGGTGTCACGTAGTTAAGGGTGGGTAGGCTGGTGGGTACAGCCAGGGCTTGAGGCCTGGTGTTAGGGTCAGGGAGTGAGGCTGCTAGGGGTAGGTTGGCAGTGGAGGCTAAGTCAGTGGTGATGTAtgtttgctgcaggggggacatGTGGGAGGTCAGGGGGATGACACTGATTGCACCCATGGGGGGCTGGTGCTGGGGGTTAGTGCTTTTACTGTCTGGGCTAGTGGGGGTTTTATAACACTGGAGTATGGGGTGACTGCTGGAGCCTGGGGTGGCTGGCTGTGAGTTCAGGggtgcagacacagacacatgccTCTGTCTCTCAGGGTCTCCCAGGAAAGCTTGGCTTGGGATGGACTCCTGAGGAACCATGGGGGTGGTCCCAGTCAGTGCCTCCTCTGCTGGTGAACCGTCCTCCGGCTGTGAATTGACAAAGACCATAACGTCTGGCATGGTGGGCCCATTCTGAACCGTCAGTGGTAGAGGATGTACACGTCGGGGACTGTCAGTGTAGGATGGCTCTTCCTTGTGGGGTACAGGGACCATAGGGTGTACAGTAGCCACAACTTTCCCCCTGCTGTGACCACTCGCCCTCTTCTGCTGGACAGAAGAGTAACTCTCAGtagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416901 lncRNA downstream 836 19006195 ~ 19006396 (-) True G2113519
TU2416900 lncRNA downstream 2488 19004495 ~ 19004744 (-) True G2113518
TU2416895 lncRNA downstream 9723 18997277 ~ 18997509 (-) True G2113513
TU2416872 lncRNA downstream 22067 18984962 ~ 18985165 (-) True G2113492
TU2416869 lncRNA downstream 22948 18984085 ~ 18984284 (-) True G2113489
TU2416905 lncRNA upstream 67 19009732 ~ 19011237 (-) False G2113520
TU2416907 lncRNA upstream 67 19009732 ~ 19011635 (-) False G2113520
TU2416910 lncRNA upstream 127 19009792 ~ 19011237 (-) False G2113520
TU2416909 lncRNA upstream 219 19009884 ~ 19011237 (-) True G2113520
TU2417201 lncRNA upstream 16697 19026362 ~ 19027287 (-) True G2113770
XR_005040223.1 mRNA downstream 41505 18958170 ~ 18965727 (-) False LOC118944847
XM_021589382.2 mRNA downstream 60044 18945248 ~ 18947188 (-) True LOC110508673
XM_036966605.1 mRNA downstream 80219 18900272 ~ 18927013 (-) True LOC110508176
XM_036966604.1 mRNA downstream 80223 18880690 ~ 18927009 (-) False LOC110508176
XM_021589380.2 mRNA downstream 127909 18864839 ~ 18879323 (-) True LOC110508671
XM_021589386.2 mRNA upstream 5476 19015141 ~ 19025982 (-) True LOC110508676
XM_036967111.1 mRNA upstream 17703 19027368 ~ 19028856 (-) True LOC118944890
XM_021588613.2 mRNA upstream 19634 19029299 ~ 19067614 (-) True LOC110508177
LOC110508178 mRNA upstream 59370 19069035 ~ 19070878 (-) True LOC110508178
XM_021589387.2 mRNA upstream 71873 19081538 ~ 19095065 (-) True LOC110508677
TU2416848 other downstream 40753 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other downstream 40753 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other downstream 47400 18958110 ~ 18959832 (-) True LOC118944847
TU2416687 other downstream 221910 18784897 ~ 18785322 (-) True G2113320
TU2416653 other downstream 264948 18741918 ~ 18742284 (-) True G2113287
TU2417253 other upstream 106425 19116090 ~ 19122056 (-) True LOC110508678
TU2419508 other upstream 1849475 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2861020 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2863551 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2933316 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile