RNA id: TU2416903


Basic Information

Item Value
RNA id TU2416903
length 1944
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G2113520
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19007232 ~ 19011635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTAAATCCAATTACAAAACGTTTAAAACTTTAAAAAACTGATTCTGAAAAACTGCTTATAGATAAGTTCCAATTTCTAAAACGTTCCACTTTACCTGTGTGTCAATTTCAGATAGCTTACAGTGTGTTGGTATGCTGGAAAACACAAAACAATCCACCTCAACagcagacagtgaaagagaaaggtgGGTTTCAATGTCACAAACAGGCGATTGTCTTTAACAACAGTGAGTGTTTTACCTTTTTTTCTAATACAGAAGTTCTCATCTGAGTACAGTAAGTGTGTGTAGTTAGCCTCTTACAGATGTGCACAAATATACACCTACATGCATAATACACTCTCATTGCTGCATGAGAAAGTAGGAATAGGGCACATAAAGTTCTGGCAACAAAGAGCTTGACACAAGCCTACACAAACGGGCAGGAGCCAAACGTTCAACATCTTCAACAGGTACAGTACATGCATGGCGGTAGGATAAGGGACAGTGATTCTGTCGCCCAATCCAAAGATCGACCACTAGCCCCTAACCTTTGCACTTGTGCAGATCAGAAATTATTGTATAGATGAGAGCAATATGGCAAGAATTCCAGCAATCTTATCAGCAGGCAAGCTCAAGTGAAGATTTTACCATTGATTACATCTATCGAATTCTTTCAGATCTACTGAAGTGCTGAGGGGTTGACTTTGGATCGACCCAAGTGCCTAGGGGGTAGGGATGGGGGGGTTGATTTGGGTCTCAGTAAATCACCTAGTAGAGGAGAGGCTTAGGGGATACATTAACCACAAGAGTCCTCTCATTGCCTGAGAGCATTTGGGACATGACCCACAAAGAACCAAAcatagatatacacacacacacacctgcacagacCTGCAAGGATTAGTGCGATTTTGCCCCCAGGAGACAGTTACAAACAAAACAGCAGCATTAAAGGGTTATAACgttacttcaggattttggcaatgaggctctttatctacttccccagtcaGATGAACTCCTGGATACCATTGTTATGTTAAGAGGTGGTTTCATGAGCCAATACTAACTAgcattagtgcaatgactggaagtctagcatgctagcagataccgtAGACTTCTAGTCATTGctctaacactagttagcaattgcACTAGCGCTAGTAAGCAGCTTCCTTCAAACTgtacgcagagacataaaaatggtatccacaaattAATCTGACTCTAGGGAAGTAGATTGCcaaaaatcccgaagtatccctttaacatcATGAATGACAGACATGATTCATTTAATACATGCTTCACATTAAATCAAGTGGCAACAAATGACAATGAAACGTTCCTTTTTCGCACAAAGTTTTTCCTTAAATGGAATACCGTTAGCTTGTAAAACAAATTAAATACAGGGTATTTATGGTACATTCAGAATATTCTGTCAAAAAAAACAAATTACATAAATATTTTATCTCATAAACCATACATCTTTCCTCCACTTTATGACAATCCAAAAAATAAAAGATAATGTGAAGTTTTTgaatattcaccccccccccccccccccccctatttttTTATaattcccacattttgttatttcaaATGGATACAAAAAAAATGCAATGAACTGGTAGGCTGCTGGCTGCTGTTTAACTGTATTTTCCTTTTGAACACCTATGCGATAATACAACCCTCTCCATCTTTTCTCTGTGAGGCACTAAGGCACTGTACTACTCACTACCTTCCCTCCCATTACAAGTGCTAGCATATAAAATAACTGACAGGGAGAACAGAGACTTGAAGTGATGTCATGCTTTAGTTCATATAGGCTACTTAGCCAACATATAACGACTTGAACCAAAGGCAGATTCTGGAAGAATTTAAATGTTCCAAAAAGACCCACATTAAAATCAGAATAGAACAATCTTTCTCTCCAAATCCATCAATCCTTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2416911 lncRNA downstream 1423 19007232 ~ 19007871 (-) False G2113520
TU2416901 lncRNA downstream 2898 19006195 ~ 19006396 (-) True G2113519
TU2416900 lncRNA downstream 4550 19004495 ~ 19004744 (-) True G2113518
TU2416895 lncRNA downstream 11785 18997277 ~ 18997509 (-) True G2113513
TU2416872 lncRNA downstream 24129 18984962 ~ 18985165 (-) True G2113492
TU2417201 lncRNA upstream 15125 19026362 ~ 19027287 (-) True G2113770
TU2417212 lncRNA upstream 25455 19036692 ~ 19037180 (-) True G2113781
TU2417213 lncRNA upstream 26798 19038035 ~ 19038270 (-) True G2113782
TU2417218 lncRNA upstream 33217 19044454 ~ 19045152 (-) True G2113787
TU2417200 lncRNA upstream 39235 19050472 ~ 19051048 (-) True G2113769
XR_005040223.1 mRNA downstream 43567 18958170 ~ 18965727 (-) False LOC118944847
XM_021589382.2 mRNA downstream 62106 18945248 ~ 18947188 (-) True LOC110508673
XM_036966605.1 mRNA downstream 82281 18900272 ~ 18927013 (-) True LOC110508176
XM_036966604.1 mRNA downstream 82285 18880690 ~ 18927009 (-) False LOC110508176
XM_021589380.2 mRNA downstream 129971 18864839 ~ 18879323 (-) True LOC110508671
XM_021589386.2 mRNA upstream 3904 19015141 ~ 19025982 (-) True LOC110508676
XM_036967111.1 mRNA upstream 16131 19027368 ~ 19028856 (-) True LOC118944890
XM_021588613.2 mRNA upstream 18062 19029299 ~ 19067614 (-) True LOC110508177
LOC110508178 mRNA upstream 57798 19069035 ~ 19070878 (-) True LOC110508178
XM_021589387.2 mRNA upstream 70301 19081538 ~ 19095065 (-) True LOC110508677
TU2416913 other downstream 797 19007232 ~ 19008497 (-) False G2113520
TU2416848 other downstream 42815 18958044 ~ 18966479 (-) False LOC118944847
TU2416847 other downstream 42815 18958110 ~ 18966479 (-) False LOC118944847
TU2416849 other downstream 49462 18958110 ~ 18959832 (-) True LOC118944847
TU2416687 other downstream 223972 18784897 ~ 18785322 (-) True G2113320
TU2417253 other upstream 104853 19116090 ~ 19122056 (-) True LOC110508678
TU2419508 other upstream 1847903 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2859448 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2861979 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2931744 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile