RNA id: TU2418297



Basic Information


Item Value
RNA id TU2418297
length 673
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G2114796
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19536964 ~ 19537636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacctatgataaaaattacagacctctacatgctttgtaagtaggaaaacctgcaaaatcggcagtgtatcaaatacttgttctccccactgtatatgacctACTATATTCAGTAGCATGGCATACACAACTTTTCATTTGATGGTGCCAATATTTACAGTGTTGGAGACAGTAGTATGATGCTAACGTTCGTACACTATATACAGGTATATGCAGTCTAGAATTGTCACTCACCATTTCATTTCCAGATACTTCTTGCAGACAGGATGGGTCAAAAGCTCTATGCGGTTAAATTTCACCATGTACTAgtaaaaacaatacacacacttTGACAACACATCAGATAATTATGTTTTCCTTTCATTTATCCAGCAATGTTGTGTTGTGGGAATGACAAATACACCAATGACCTGTTCCTGATACTGTACCATTTTGTTTTAAAATGTTAGTTGGGGTAACTTCATTGCCCTTAACTCTGGAGCAAAATACCACGTTTGAAAACTGTGAAGTTcagtctacagtattacagtgGGTACTCACGTTCAGAGCAGTGAGAGGCTGGAAGTCAAAGCTTTTGTCTGCTTTTGCAAGCTTAATGACATGCATGGGAGCTTGTAGCCATCTGAAAGTGTACTCGATctgttgtataaaaaaaaatgtattatattacaAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2418295 lncRNA downstream 43 19536460 ~ 19536921 (-) True G2114795
TU2418228 lncRNA downstream 46522 19489813 ~ 19490442 (-) True G2114741
TU2418256 lncRNA downstream 60933 19475831 ~ 19476031 (-) True G2114757
TU2418253 lncRNA downstream 62779 19473867 ~ 19474185 (-) True G2114754
TU2417432 lncRNA downstream 129585 19407121 ~ 19407379 (-) True G2113988
TU2418288 lncRNA upstream 2115 19539751 ~ 19540581 (-) True G2114788
TU2418285 lncRNA upstream 92469 19630105 ~ 19637488 (-) True G2114785
TU2418289 lncRNA upstream 103855 19641491 ~ 19641944 (-) True G2114789
TU2418356 lncRNA upstream 119465 19657101 ~ 19658710 (-) True G2114851
TU2418466 lncRNA upstream 207795 19745431 ~ 19745687 (-) True G2114910
XM_021589412.2 mRNA downstream 19674 19490721 ~ 19517290 (-) True LOC110508692
XM_021589411.2 mRNA downstream 48416 19484950 ~ 19488548 (-) True LOC110508691
XM_021589409.2 mRNA downstream 64547 19469835 ~ 19472417 (-) True tmem70
XM_021589405.2 mRNA downstream 110621 19415704 ~ 19426343 (-) True crispld1b
XM_021589404.2 mRNA downstream 110666 19415704 ~ 19426298 (-) False crispld1b
XM_021589413.2 mRNA upstream 4276 19541912 ~ 19558555 (-) False LOC110508693
XM_021589414.2 mRNA upstream 7197 19544833 ~ 19558553 (-) True LOC110508693
XM_021589415.2 mRNA upstream 105337 19642973 ~ 19648077 (-) True LOC110508694
XM_036966357.1 mRNA upstream 134695 19672331 ~ 19704162 (-) False LOC110508698
XM_036966358.1 mRNA upstream 134695 19672331 ~ 19704285 (-) False LOC110508698
TU2417253 other downstream 414908 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 527299 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 528467 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 570485 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 1321504 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 2333049 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 2335580 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 2405345 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 2405345 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile