RNA id: TCONS_00055627


Basic Information

Item Value
RNA id TCONS_00055627
length 595
lncRNA type lincRNA
GC content 0.50
exon number 2
gene id XLOC_028690
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17113379 ~ 17216223 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTAGCCAAGCCCAGTGTGCTGGATTTAAATGGTCCAGTTTTGTCACATTTGCTTTGCTCAACCGAGCACTGGCGCTAAGGTAACCACTCTTGGCTCAGAGCCTGTTGTTTAGAACACGAAACAAATTGACTTCTCCTCCCCCAAGTCTTTGCCTTTTGTAATTTTGCTTTGGCGTTGTTGTTTGTGTGTGACCAGCCCTGGGATTTCACCTCGTCCTTGAGAGACCAGCGCAAATCAACACAGATAAGACATCCCGACCCTGTTCACCTAACCCGGAGGGTCGTTTTCCTTCGAGACACGTGGACGGAGACGTACGCGACACTAGGGACCGAAGAGCTCCAGCCTCTATAGAGGGACTCAGACAGGGTGGGAGGAGATCCCAGCAGGTAAAAAGACCCACCGCAGGTCACGACCACAAACAGCATATCAGCTGGCTATTTCTGAAGGGGCCATTGTGCTTGATTTCGGCCCAGACGCTACAGCAAAACccttacatacacatacacacacacgtccCTCACACCTGGGTGTAGGTCAAACTGTTTAAGGGCAATGGCTTGTAAATGTTACTTTCACTTGTATGGGAGgcggt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194366

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058180 lncRNA downstream 394695 16773010 ~ 16786750 (-) False XLOC_028684
TCONS_00058181 lncRNA downstream 397011 16779023 ~ 16784434 (-) False XLOC_028684
TCONS_00058179 lncRNA downstream 403571 16773010 ~ 16777874 (-) False XLOC_028684
TCONS_00058177 lncRNA downstream 403756 16763705 ~ 16777689 (-) False XLOC_028684
TCONS_00058178 lncRNA downstream 403798 16773010 ~ 16777647 (-) False XLOC_028684
TCONS_00058183 lncRNA upstream 355097 17571295 ~ 17574682 (-) False XLOC_028696
TCONS_00058184 lncRNA upstream 658873 17875071 ~ 17882497 (-) False XLOC_028707
TCONS_00058185 lncRNA upstream 658873 17875071 ~ 17882619 (-) False XLOC_028707
TCONS_00058186 lncRNA upstream 658873 17875071 ~ 17882877 (-) False XLOC_028707
TCONS_00058187 lncRNA upstream 658873 17875071 ~ 17882930 (-) True XLOC_028707
TCONS_00055625 mRNA downstream 125495 16985029 ~ 17055950 (-) True XLOC_028689
TCONS_00055624 mRNA downstream 125663 16982249 ~ 17055782 (-) False XLOC_028689
TCONS_00055623 mRNA downstream 298394 16876831 ~ 16883051 (-) True XLOC_028688
TCONS_00055622 mRNA downstream 305109 16857722 ~ 16876336 (-) False XLOC_028687
TCONS_00055628 mRNA upstream 27874 17244072 ~ 17244923 (-) True XLOC_028691
TCONS_00055629 mRNA upstream 36398 17252596 ~ 17278928 (-) False XLOC_028692
TCONS_00055630 mRNA upstream 37223 17253421 ~ 17278904 (-) False XLOC_028692
TCONS_00055631 mRNA upstream 37411 17253609 ~ 17257435 (-) False XLOC_028692
TCONS_00055633 mRNA upstream 41162 17257360 ~ 17263210 (-) True XLOC_028692
TCONS_00055587 other downstream 967905 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 1173278 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055578 other downstream 1421772 15757435 ~ 15759673 (-) False XLOC_028663
TCONS_00055559 other downstream 2436754 14744576 ~ 14744691 (-) True XLOC_028647
TCONS_00055550 other downstream 2736670 14437242 ~ 14444775 (-) True XLOC_028642
TCONS_00055632 other upstream 41162 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055646 other upstream 511188 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other upstream 520245 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055657 other upstream 699734 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 783319 17999517 ~ 18038547 (-) False XLOC_028708

Expression Profile

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