RNA id: TU2419271


Basic Information

Item Value
RNA id TU2419271
length 2548
lncRNA type antisense_over
GC content 0.43
exon number 12
gene id G2115635
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20654687 ~ 20668962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTGATTTAGGTCTTTTTGCATTTATTCAGAGCACAGTAATCACACACATGGTCATGTCACTCACATCAAtctcattgtaaaaaaaaacaacacaagaaATATACGTCACATTAGTAACTTGTTAGACTCTTGTGACAGCCTTAATATTAATACGATTAAACAGAAACATGAACATAGTCCAAAAGATACGCTGCTTAATATCTATTAATGTACCTTAATGTAACAGCTCAAATAAAAATAGACCTTTAATAGTACTGGTCAATCTGCTGATTGAATTCAACAAGCTATGGCTAAAGTTATAATAAATTTGTGGTAAATTGTACATTTTGTGCTGTTCAATGTGCTGATTCTTTTTCATGTTTGCAACAGATTCAGTACATTTTATTAATGTGATCATTCTCTGTAAAAAGCCTGCGTTACATTAGTAGGTTTATACTTCAATATGAAGTTGAACTCAAAGGTGAATCTTTAGCTTGCTTAACAAATAAGTAAGCAGTAAACATGTccgacaatatctctctctgcgGAATAACCGATTGTTTTGCTGGTGGATTGAAGAAACCAGCACATTAGCAGACATTTTACACCCCAAATTGCACTCTGTTCCCTATACAGtcaactacttttgaccattgtGCCCAACAGTTGTGCACTAttaagggaatggggtgccatttgggactcagacatTGACTTCCTACTGCTGCTGTTGGTACTGTCCCTCAGTGGCGGTATAAAAGTCATCCAAGACACTCTGGATGTAGTCAAATGTGGGCCTGTCGTCTGGCTTGCTCTTCCAGCAGGTGGTCATGATGTCATAGAGCTCGTTGGGACAGTTCTCAGGGCGGGGCATTCTATAACCTTTCTGCACTGATGTCATCACTTCACCATTGCTCATCCCTGGATAAGGTATTTTTCCATAGGTAATGATTTCATACAGGAGGACTCCGAAGGACCACATGTCTGATTTGATCGTGAAGGAGCCAAAGTTGATGGCCTCTGGTGCTGTCCACTTGATGGGAAACTTAGCTCCCTCTCTGGCTGTATACTGGTCATCCTCAATGACTCTAGCCAGACCAAAGTCAGCTATTTTACAAAGCAAACTCTCAGACACCAGGACGTTGGCTGTTCTCAGGTCACGGTGGATGTAGTTCTTCTTCTCAATGTACGCCATGCCCTCTGCAATCTGTGCAGAAAAATCGATTAGCTTAGGTAGCTGTACTTTGCAGCCCGTCTCACTTTTTAAGAAATCTAAGAGGCTACCTACAAAAGGTAAAGAAACAAAATTGAGGGATAGAAACCAAACCAATGAAAATATAGGTGATTTACAGAACACTTATGTAACTTATGTAGCATCAAATGGTATGTATTGATGAAAACAGTCCATGCTGGCCACATAACAGTGTTTGAAACCATGAGGTCTGTCTTGTAGGAATtggactcagtgtgtgtgtgttaccattgGACATGTACTCTGTGATGATGTAGATGGGCTCGATCTTGGTGACGACGGCGTAGAGGCGCACCAGTCTGTCGTGTTGCAGGGTCTTCATGAGGTTAGCCTCCTCCATGAACGCCTCCGCTGACATGGTGCCTGGCTTCAGCGTCTTCACTGCCACCTTGGTCGTGTTGTTGTAGAACGCCATCCACACTTCTCCAAACTGTCCTGCTCCCAGCTTCTTCACCATCTTGATGGACTCCTTGGAGATCTCCCAGGCATCTTTGTCCCATGGCTTCTGAGCTTCGGGTTTATCACACGGCTTCTCCAGCTTTCGACAGAGACCATCTGATTGTTTGTAATAATGTTTTATCATGCTACCAATGTCAGGGAATGTGATTTTAGGAGAGATGTAGAAGCCGCCATTATCCAGCGTGCGGATCTTATAATGTTTTACAGCGTTTATTCCCTGGGCATCCACATCTCTGATAGACATGGAATAACTTCCTTTTGATGTCTCACTCTCACGAATGAGGTAAGAGCCTGCTTTGTTAGCAGGGGCCAAAAGTTGTCTTTCTGCGTCCTTCCTTGTAATATCCTTGAAAAACCATTCCTCTGTCTCCATGGTGTTGGCCTCTGCAACATAATTGGAGGGTATGAACCCTTCTTTCTTAGTGGTCAGAGACCTAGCCTTCCACCATTCACCATGCTCTTCAAGAACCTTAAGCCTTTCGCCCTTCTTGAATCCCAAATCGTCTGCATGTATTGCATCATATGGGTATATTGCAATAGCTATTTTACCAGACTCGCTTTGCTCTTCCATTTTCATGAATACCTGACCAGGCAGGAGACCTCCAGGAGGTGAGTTACGTGTAGCACTTGCTTTAATGGAGGTGCGATCTTTCAGATTTACAGTTTGATCGGGATGTACTGGCTGTCGGTTCTTGCCATCAAGCACACCTCCATTCAGACCGGCATTCAGCTTGGATTTTTTACAACCCATGTTGCCTGTCAAATTTCACTAGTTGGAGAAGCGGCTGAGCGGCTAATTAAAAAAGACAAATGTTAGTAATCCTCAACTTGCTCGTTATTAGAGCTGCCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2419167 lncRNA downstream 108001 20488981 ~ 20546686 (-) True G2115558
TU2419201 lncRNA downstream 136260 20517392 ~ 20518427 (-) True G2115581
TU2418972 lncRNA downstream 199016 20455362 ~ 20455671 (-) True G2115392
TU2418950 lncRNA downstream 210992 20443334 ~ 20443695 (-) True G2115370
TU2418939 lncRNA downstream 218806 20435528 ~ 20435881 (-) True G2115359
TU2419316 lncRNA upstream 8552 20677514 ~ 20737477 (-) False G2115671
TU2419315 lncRNA upstream 9802 20678764 ~ 20681820 (-) True G2115671
TU2419287 lncRNA upstream 16969 20685931 ~ 20690570 (-) True LOC110508717
TU2419482 lncRNA upstream 127367 20796329 ~ 20845750 (-) True G2115812
TU2419465 lncRNA upstream 134391 20803353 ~ 20809150 (-) True LOC110508719
XM_021589454.2 mRNA downstream 17596 20629353 ~ 20637091 (-) False LOC110508714
XM_021589455.2 mRNA downstream 17596 20629353 ~ 20637091 (-) False LOC110508714
XR_005040122.1 mRNA downstream 17596 20629955 ~ 20637091 (-) True LOC110508714
XM_021589456.2 mRNA downstream 17630 20629353 ~ 20637057 (-) False LOC110508714
XM_021589458.2 mRNA downstream 17630 20629353 ~ 20637057 (-) False LOC110508714
XM_021589461.2 mRNA upstream 16964 20685926 ~ 20730655 (-) False LOC110508717
XM_021589462.2 mRNA upstream 16964 20685926 ~ 20730656 (-) False LOC110508717
XM_036965896.1 mRNA upstream 123178 20792140 ~ 20797546 (-) False LOC118936610
XR_005040123.1 mRNA upstream 123178 20792140 ~ 20799687 (-) True LOC118936610
XM_036965895.1 mRNA upstream 134249 20803211 ~ 20807499 (-) False LOC110508719
TU2417253 other downstream 1532631 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1645022 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1646190 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1688208 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 190178 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1201723 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1204254 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1274019 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1274019 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile