RNA id: TU2419474


Basic Information

Item Value
RNA id TU2419474
length 2514
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G2115807
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 20813149 ~ 20823179 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaactaatagtagagagaatgaataatttatttcagcttttatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcgggtagccttccacaagcttcccacaataagttgggtgatttttggcccattcctcctgacagagctggtgcaactgagtcaggtttgtaggcctccttgctcacaaattttgcccacaaattttctataggattgaagtcagggctttgatggccacgtcaataccttgactttgttgtccttaagctattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacataattttctgtcctcatgatgccatctattttgtgagtgcaccaggccctcctgtagcaaagcccccccacaacatgatgctgctaccccgtgctctacggttgggatggtgttcttcggcttgcaagcatccccctttttcctccaaacattacaatggtcattatggcccaacagttctatttttgtttcatcagaccagaggacatttctccaaatagtatgatctttgtccccatgtgcagttgcaaaccatagtctggcttttttatggcggtttggtagcagtggcttcttccttgctgagcggcctttcaggacttgttttactgtggatatatatatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggatggatttgcacttttcgcattaatctctaggagacagaacgcgtctccttcctgaacggtatgacagctgcgtggtcccatggtgtttatacttgcgtactattgtttgtacagatgaacgtggtaccttcaggggtttggaaattgctccaaggatgaacaagacttgtggaggtctacaatttattttctgaggtcttggctgttttcttttgattttccaatgatgtcaagcaaagaggcactgagtttgaaggtagtccttgaaatgcatccacagatacacctccaattaactcaaatgttgtcaattagcctatcagaagcttctaaagccatgaccatTTTCatgatcattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaatattacttgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttgacaagaaatttgtggagtggttgaaaaacaagttttaatgactccaactaaagtgtatgtaaacttctgacttcaactatacatATGAAAGTAACAAATCTAACACTCTTAACATGGAGAAAGGGTTGTGGTCTGAATGAAAAACGGCATACTCACTGCCTTCCCAACATTGAGATCCCTGCCTTAAGATTCATAGTGACTGGTAGTATTTTTGTTCTGGACGATTGTGCGTTTCAGATGAACGAGTCCAAGCTAAGGTGTAGGGAATAGATCCTTACCATTTTTATTAAAGGGCTAGTTAATGAGTGGTTTACCAGACTACTGAGGTCTCTTGTGGAGACTAATAAAAATGTACATTACAGAGCATTTAAACAGTAAACTTACCAGTAAAACAAGTTTGTTTAAATGTACACCCCCACGAGCACTGGAAATGTGATCGTTTGTACATACCTTTAACATTTTGAAATGTTTGGCAGGCCTATATGTTGGTGTGCACATTTTTAAGGATTGTTTTTCAGATGACTGCTTAGAGAGAAACTGGTTCAGAATCTACCAAAGGATCACTTTATAGCTCTATGTATAGAGGAATGTGTCGAGTGTGGCTTGAATGTGTGATCCACCACACTTTTGTCAGTGGGTCCTATTTTTGGTCAGCGGCTCCGTTGGGTATAAGCTGTGCAAACAGCACTAGTTGGTGTGGATGGCTCACTCACTTGTGCTTTGGTTCATGACTCCCTTGGCACCTGTTTTGATATACTGAAATACTCCAGTCAGTAACTACTTTAATAGGAAATTGCACTTGAAAAGAACAATGTTAATCTCGTTTATCACTACATTTCTATGCAATAAATGTAAACTGTGTCAGGATTGTTTTGCATAGAGGATCTATTTTGATATTTATAAAAAGATCAATTTCACATCTTACTACTTTGTATGCAGTTTGTCTGGATGCAATGTTGTGATATTGATTGTTCAAATTCTTTATTTTGTTGTTATTCCCCTccagtcttggctgatttatgaACATGTATTAGCAGAACACTTGTTTTAATCCAAATCTGGTTTGAGTTGTACTTTGTTTAAGGAACATGTTCCCAATCgcttaaataaatgtttattttgctTCTTTTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2419470 lncRNA downstream 104 20809952 ~ 20813045 (-) True G2115806
TU2419465 lncRNA downstream 3999 20803353 ~ 20809150 (-) True LOC110508719
TU2419316 lncRNA downstream 75672 20677514 ~ 20737477 (-) False G2115671
TU2419287 lncRNA downstream 122579 20685931 ~ 20690570 (-) True LOC110508717
TU2419315 lncRNA downstream 131329 20678764 ~ 20681820 (-) True G2115671
TU2419503 lncRNA upstream 25189 20848368 ~ 20848656 (-) True G2115833
TU2419517 lncRNA upstream 48508 20871687 ~ 20871897 (-) True G2115847
TU2419536 lncRNA upstream 64249 20887428 ~ 20887676 (-) True G2115864
TU2419787 lncRNA upstream 188159 21011338 ~ 21011963 (-) True G2116108
TU2419874 lncRNA upstream 337393 21160572 ~ 21160771 (-) True G2116194
XM_021589464.2 mRNA downstream 4576 20805752 ~ 20808573 (-) False LOC110508719
XM_021589466.2 mRNA downstream 4585 20803211 ~ 20808564 (-) False LOC110508719
XM_036965895.1 mRNA downstream 5650 20803211 ~ 20807499 (-) False LOC110508719
XR_005040123.1 mRNA downstream 13462 20792140 ~ 20799687 (-) True LOC118936610
XM_036965896.1 mRNA downstream 15603 20792140 ~ 20797546 (-) False LOC118936610
XR_005040291.1 mRNA upstream 528487 21351666 ~ 21368101 (-) False LOC110508727
XM_021589482.2 mRNA upstream 553519 21376698 ~ 21521909 (-) True LOC110508729
XM_021589483.2 mRNA upstream 699680 21522859 ~ 21531314 (-) False LOC110508730
XR_005040282.1 mRNA upstream 699680 21522859 ~ 21531314 (-) False LOC110508730
XR_005040283.1 mRNA upstream 699680 21522859 ~ 21531314 (-) False LOC110508730
TU2417253 other downstream 1691093 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 1803484 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 1804652 19007232 ~ 19008497 (-) False G2113520
TU2416847 other downstream 1846670 18958110 ~ 18966479 (-) False LOC118944847
TU2419508 other upstream 35961 20859140 ~ 20859530 (-) True G2115838
TU2421079 other upstream 1047506 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 1050037 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 1119802 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 1119802 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile