RNA id: TU2420324


Basic Information

Item Value
RNA id TU2420324
length 580
lncRNA type intronic
GC content 0.45
exon number 1
gene id G2116615
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21289101 ~ 21289680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagagtgatgagctgtgttgcttttacgccaaacattacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccaaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctcggatcagtcttctccttgtatgagctgaaagtttagagggacggcaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420323 lncRNA downstream 493 21286774 ~ 21288608 (-) True G2116614
TU2420319 lncRNA downstream 7099 21281713 ~ 21282002 (-) True G2116610
TU2420314 lncRNA downstream 16263 21272440 ~ 21272838 (-) True G2116605
TU2420303 lncRNA downstream 33169 21255662 ~ 21255932 (-) True G2116594
TU2420302 lncRNA downstream 33496 21255307 ~ 21255605 (-) True G2116593
TU2420325 lncRNA upstream 56 21289736 ~ 21290160 (-) True G2116616
TU2420327 lncRNA upstream 5795 21295475 ~ 21295882 (-) False G2116617
TU2420328 lncRNA upstream 5949 21295629 ~ 21295882 (-) True G2116617
TU2420357 lncRNA upstream 57935 21347615 ~ 21348624 (-) True G2116646
TU2420359 lncRNA upstream 59722 21349402 ~ 21349805 (-) True G2116648
XM_021589469.2 mRNA downstream 448907 20815693 ~ 20840194 (-) False LOC110508720
XM_036966509.1 mRNA downstream 448907 20815693 ~ 20840194 (-) True LOC110508720
XM_021589467.2 mRNA downstream 448908 20815693 ~ 20840193 (-) False LOC110508720
XM_021589468.2 mRNA downstream 448909 20815693 ~ 20840192 (-) False LOC110508720
XM_021589464.2 mRNA downstream 480528 20805752 ~ 20808573 (-) False LOC110508719
XR_005040291.1 mRNA upstream 61986 21351666 ~ 21368101 (-) False LOC110508727
XM_021589482.2 mRNA upstream 87018 21376698 ~ 21521909 (-) True LOC110508729
XM_021589483.2 mRNA upstream 233179 21522859 ~ 21531314 (-) False LOC110508730
XR_005040282.1 mRNA upstream 233179 21522859 ~ 21531314 (-) False LOC110508730
XR_005040283.1 mRNA upstream 233179 21522859 ~ 21531314 (-) False LOC110508730
TU2419508 other downstream 429571 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2167045 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2279436 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2280604 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2329269 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 581005 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 583536 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 653301 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 653301 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 653301 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile