RNA id: TU2420328


Basic Information

Item Value
RNA id TU2420328
length 221
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G2116617
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21295475 ~ 21295882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCGGAAACTGCTTTTCCGCCATGCTTCAGTCAGGAGCGCTTTCAAGCAGAGGGACCTCTTTCTCTTCCGTGAGGATGTAGTCTATGTCCGTGCTGCTGCTCGTCTTCTTCTGGACACTGTCGCCCCGTTGCTCTCTCGATTCCCTTGTCTCCGACCGTAGCTGAAGTGGCGTCTCTCCTTTGTATTAATTCTCCACTAACCCAGGAACTTTTCTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420325 lncRNA downstream 5469 21289736 ~ 21290160 (-) True G2116616
TU2420324 lncRNA downstream 5949 21289101 ~ 21289680 (-) True G2116615
TU2420323 lncRNA downstream 7021 21286774 ~ 21288608 (-) True G2116614
TU2420319 lncRNA downstream 13627 21281713 ~ 21282002 (-) True G2116610
TU2420314 lncRNA downstream 22791 21272440 ~ 21272838 (-) True G2116605
TU2420357 lncRNA upstream 51733 21347615 ~ 21348624 (-) True G2116646
TU2420359 lncRNA upstream 53520 21349402 ~ 21349805 (-) True G2116648
TU2420373 lncRNA upstream 55770 21351652 ~ 21351869 (-) True LOC110508727
TU2420380 lncRNA upstream 61608 21357490 ~ 21357771 (-) True G2116668
TU2420381 lncRNA upstream 64187 21360069 ~ 21360276 (-) True G2116669
XM_021589469.2 mRNA downstream 455435 20815693 ~ 20840194 (-) False LOC110508720
XM_036966509.1 mRNA downstream 455435 20815693 ~ 20840194 (-) True LOC110508720
XM_021589467.2 mRNA downstream 455436 20815693 ~ 20840193 (-) False LOC110508720
XM_021589468.2 mRNA downstream 455437 20815693 ~ 20840192 (-) False LOC110508720
XM_021589464.2 mRNA downstream 487056 20805752 ~ 20808573 (-) False LOC110508719
XR_005040291.1 mRNA upstream 55784 21351666 ~ 21368101 (-) False LOC110508727
XM_021589482.2 mRNA upstream 80816 21376698 ~ 21521909 (-) True LOC110508729
XM_021589483.2 mRNA upstream 226977 21522859 ~ 21531314 (-) False LOC110508730
XR_005040282.1 mRNA upstream 226977 21522859 ~ 21531314 (-) False LOC110508730
XR_005040283.1 mRNA upstream 226977 21522859 ~ 21531314 (-) False LOC110508730
TU2419508 other downstream 436099 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2173573 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2285964 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2287132 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2335797 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 574803 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 577334 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 647099 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 647099 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 647099 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile