RNA id: TU2420357


Basic Information

Item Value
RNA id TU2420357
length 921
lncRNA type antisense_over
GC content 0.34
exon number 3
gene id G2116646
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21347615 ~ 21348624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATCtttaaaatagattttatttaccATTTGTAATGGCACAGTTTACGATATACAGCTGACATGACTAAGACAATTCAATGGATTTTGGCCCTAAGGTTCAAGAGACATGGTTAGATATATATGAGAAAGTACCAGCACTGTGTTCATTTCATTTGTGCTTTATTCTCCACTGTGATAGAATTGACATTGGCATAACATTGTGTCTTCTCTGCTGACATGTTGACACAGCAGCTTGTGCAGACCACTGTAAAGGCCTTATTTCAAAATGGAAGTTTGTATTGTTAAATATGTTATAAACACAAATTACTTGATTTAAAGTGCTGAAAAAAAAACGTGTAAAAACATGTTTATGAGTTAGAAATTCAAGATCTCCTCGGTGATCGTCGAAAACCAGAGTAGATAAATCACAGTTTTAGTACAGTAGAGGCCGAGTATCAGTTTTCAGAACTGGTAACGTATTCATTTCTTACATCCCATATATAGATGACTTACTACAACGATTTCTAAATGAGATGAAAAACAATGTCCAAATGTGTCCTTGAGTGTACATTTTTCACTACCTGCTTATATTAATTTTGAAGGAAAGATCTCACCAAATAATAATCCTTATTGTCCAATTAGTTTATATTCTAAAACACTTCCCCAATACATTGATATTTTGATCTAATGTCATATTTATTGCAGTTACAATGTTACCGATTTTGGCGTTTGATTTCTGTAATCTTTTTTTTTGCCTTGCCATGTAAAATACTCCATCAAATCGAAAAGGCCAGTCTCTTTACACAACGGAATTTACAGTACAGTCGCTACATTGTAACCGGATGTCGCTGCAGTATAGTACCACGGTGTTGGCTTAATACTATTGGCATTATTACTACGTAAAAtggattaatactgttattatatACTTTCCCCAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420327 lncRNA downstream 51733 21295475 ~ 21295882 (-) False G2116617
TU2420328 lncRNA downstream 51733 21295629 ~ 21295882 (-) True G2116617
TU2420325 lncRNA downstream 57455 21289736 ~ 21290160 (-) True G2116616
TU2420324 lncRNA downstream 57935 21289101 ~ 21289680 (-) True G2116615
TU2420323 lncRNA downstream 59007 21286774 ~ 21288608 (-) True G2116614
TU2420359 lncRNA upstream 778 21349402 ~ 21349805 (-) True G2116648
TU2420373 lncRNA upstream 3028 21351652 ~ 21351869 (-) True LOC110508727
TU2420380 lncRNA upstream 8866 21357490 ~ 21357771 (-) True G2116668
TU2420381 lncRNA upstream 11445 21360069 ~ 21360276 (-) True G2116669
TU2420453 lncRNA upstream 118772 21467396 ~ 21485315 (-) True G2116739
XM_021589469.2 mRNA downstream 507421 20815693 ~ 20840194 (-) False LOC110508720
XM_036966509.1 mRNA downstream 507421 20815693 ~ 20840194 (-) True LOC110508720
XM_021589467.2 mRNA downstream 507422 20815693 ~ 20840193 (-) False LOC110508720
XM_021589468.2 mRNA downstream 507423 20815693 ~ 20840192 (-) False LOC110508720
XM_021589464.2 mRNA downstream 539042 20805752 ~ 20808573 (-) False LOC110508719
XR_005040291.1 mRNA upstream 3042 21351666 ~ 21368101 (-) False LOC110508727
XM_021589482.2 mRNA upstream 28074 21376698 ~ 21521909 (-) True LOC110508729
XM_021589483.2 mRNA upstream 174235 21522859 ~ 21531314 (-) False LOC110508730
XR_005040282.1 mRNA upstream 174235 21522859 ~ 21531314 (-) False LOC110508730
XR_005040283.1 mRNA upstream 174235 21522859 ~ 21531314 (-) False LOC110508730
TU2419508 other downstream 488085 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2225559 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2337950 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2339118 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2387783 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 522061 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 524592 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 594357 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 594357 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 594357 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile