RNA id: TU2420572


Basic Information

Item Value
RNA id TU2420572
length 1947
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G2116849
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21630866 ~ 21640332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCACATTTCAAACACTTGTTCTTCATCTTACCGTATCCGATGGACTTAAAGGAAATACTTCCAAGGTCTCTCTGAAGTCTTCAATCATCTGGTAAAACTGCTTGTTCGGTCGGTTTGTGTCACCAACTTTCCCTTCTTGGGCACCATGTCAGAACTCTTGACTGCATGGGACAATCTTTTGTTCACTGGTTTGCTCATGTCTGTGGGTACCACAGATCTCCGTTTGTTTGAGGTGACTAAGACACTCTTGGTATCGTTGACTGGCGGCAGGACAACAGTCTGCCTCTGATTGTTCCTCTTCCCCACTCGGTTGGGCACACCAGAAGCTTTGAGGACAGAGGGTGGATACTCTGAAGACAGGAAGTCTTGTTTAGTCTTAGCAGGTTCAGAGACTGGAGCAGGGGCCCGGAACAAGCATGTCTGCCGTATGGACTTTCTAGGAAGTGGAACTGAGTAGAAGAGTATAGTTAGCCTAACACCTTAACCACTACAGTTGTATTGAGTAGTCTTTTGTATGATTAATAACTTGTTCATCATCCTTCTGATCCCAACACTAGGCCAGTTGTGTAAAGTacgtaagtaaaaatacttgaaagtactaaagtagtttttggggcatctgtactttaccatttatatttttgacaacttttacttcacaacATTGCAAAAGAAAATTTACATTTTACTCCGTACAATATCccagacacccaaaagtacttgttacattttgactgCCTAGCAGAACAGAAAAATTGTCTTaggatttgggtatgtaattttaggcaaaaattgaagggggggaaaaaaagaaaaaaagtccGCTCCttaaaaggtatctttacttttactcaagtatgacaattgagtactttctCCACCATTGCACTAGACAAACCATATAAATATCATGATTTCAACGTAGGCCTAGTAAACAGCTGGCCAGCTCCTTTTCCACTACTAATTCTCAATGTGTTCAATTTTAGCTGGGCGAATCAGGAATGCCATGTCAATTACTTTGTGTTACCTTGTTACCTTTTAAATGGTCAAATATATacattcaatggttgtaaagatgtgGAGAGGTCTCGACTTTGACACCACAATtcaaaaagcaagtcctgcaggctctatttgtcttatcttgattattgtccagtcatgtggtgaAAAGAaaatacctagttaagctgcagctagcccagaacagagtggcacgtcttgctcttcattgtaatcagaaggctaatataaatactatgcaggCCAGTTTCtattggctaagagttgaggagtgtgactgcatcacttctttatATAAGAAACATGTGGAAAATTCAAAATTGTTTACAGTGAACTTATACACAGCTCTGGCAcgcacacttaccccaccagacataccaccaggggtcttttcagtgcccaaatccagaacaaattcaagaaagcgtacagtattatatagagacaTTGCAGGGAActcccatctcatattgctcaaatgaacagcaaacctggtttataaatttaaaaaattaaatgacAAAATACCTCAtggcacaatgcctctcccctaGATATTGTCTACATATCCATACCTACACACTGTGTGCCATTTTtacatgtatgtagttctgtacttgagctgttcttgtctaataaTGTTCTTAAGTCATTTTCATGTGGACACatgttgcgaaagcagcagctactcttacaatggggatcctaaaacaacctcacctggttgtcgaggtcttaattgaaaggtaAAAACCGGCAGACTCTGCCCTCTGTGGAATGCATTGAACTAGAAAGAGTGCTAGTACCCTTAACAAAACTGCTTAGGGTCACTTTACAGTacaaatacactgagtataccaaacatcaggaacaccttcctaatattaagttgcacccccacctgttgccctcagaacagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2420571 lncRNA downstream 1403 21630866 ~ 21632511 (-) False G2116849
TU2420538 lncRNA downstream 17465 21582354 ~ 21616449 (-) True G2116818
TU2420508 lncRNA downstream 85974 21545325 ~ 21547940 (-) False LOC110508732
TU2420509 lncRNA downstream 85974 21546857 ~ 21547940 (-) True LOC110508732
TU2420475 lncRNA downstream 126280 21489925 ~ 21507634 (-) True G2116760
TU2420592 lncRNA upstream 25088 21665420 ~ 21665702 (-) False LOC110508734
TU2420591 lncRNA upstream 25636 21665968 ~ 21667336 (-) True LOC110508734
TU2420599 lncRNA upstream 42519 21682851 ~ 21683143 (-) True G2116873
TU2420603 lncRNA upstream 49664 21689996 ~ 21690248 (-) True G2116877
TU2420610 lncRNA upstream 58325 21698657 ~ 21698863 (-) True G2116884
XR_002471355.2 mRNA downstream 85953 21545240 ~ 21547961 (-) False LOC110508732
XR_002471354.2 mRNA downstream 102598 21522859 ~ 21531316 (-) False LOC110508730
XM_021589492.2 mRNA upstream 25076 21665408 ~ 21700959 (-) False LOC110508734
XM_021589493.2 mRNA upstream 67050 21707382 ~ 21752831 (-) False eif2b3
XM_036966443.1 mRNA upstream 67050 21707382 ~ 21753569 (-) False eif2b3
XM_036966444.1 mRNA upstream 67050 21707382 ~ 21781228 (-) False eif2b3
XM_021589494.2 mRNA upstream 67050 21707382 ~ 21785903 (-) True eif2b3
TU2419508 other downstream 774384 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2511858 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2624249 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2625417 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2674082 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 230353 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 232884 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 302649 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 302649 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 302649 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile