RNA id: TU2420615



Basic Information


Item Value
RNA id TU2420615
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2116889
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21703405 ~ 21703615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGTTATATGTAGCCTATCAGCCATATGAAGTTACAAGTAGTTGCACGGTTGTTAAAAAAATTGAAATTAATGTATCTACAAAACTAAAGTTACTTATTTTGTTGACTTTCATATGATGTACAAAAATTGCCGCTATGCCAAGTTCTACCCTTATGGGTTGGTTTCCTGGACACATATTAAAGGCATGGACACCAGTAGTTTGCCAGCTg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2420610 lncRNA downstream 4542 21698657 ~ 21698863 (-) True G2116884
TU2420603 lncRNA downstream 13157 21689996 ~ 21690248 (-) True G2116877
TU2420599 lncRNA downstream 20262 21682851 ~ 21683143 (-) True G2116873
TU2420591 lncRNA downstream 36069 21665968 ~ 21667336 (-) True LOC110508734
TU2420592 lncRNA downstream 37703 21665420 ~ 21665702 (-) False LOC110508734
TU2420618 lncRNA upstream 1819 21705434 ~ 21705669 (-) True G2116892
TU2420709 lncRNA upstream 65169 21768784 ~ 21768998 (-) True G2116982
TU2420729 lncRNA upstream 79913 21783528 ~ 21783798 (-) True G2117001
TU2420743 lncRNA upstream 89355 21792970 ~ 21793230 (-) True G2117015
TU2420745 lncRNA upstream 90903 21794518 ~ 21794761 (-) True G2117017
XM_021589492.2 mRNA downstream 2446 21665408 ~ 21700959 (-) False LOC110508734
XR_002471355.2 mRNA downstream 155444 21545240 ~ 21547961 (-) False LOC110508732
XR_002471354.2 mRNA downstream 172089 21522859 ~ 21531316 (-) False LOC110508730
XM_021589493.2 mRNA upstream 3767 21707382 ~ 21752831 (-) False eif2b3
XM_036966443.1 mRNA upstream 3767 21707382 ~ 21753569 (-) False eif2b3
XM_036966444.1 mRNA upstream 3767 21707382 ~ 21781228 (-) False eif2b3
XM_021589494.2 mRNA upstream 3767 21707382 ~ 21785903 (-) True eif2b3
XM_021589495.2 mRNA upstream 149297 21852912 ~ 21862431 (-) True plk3
TU2419508 other downstream 843875 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2581349 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2693740 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2694908 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2743573 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 167070 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 169601 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 239366 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 239366 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 239366 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile