RNA id: TU2420709



Basic Information


Item Value
RNA id TU2420709
length 215
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2116982
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21768784 ~ 21768998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGACTGTAACTCCTTATTTTGAATTTCCATGAGCTCACAAGCTTTGGGTGCTGACATGTAGAGTGTggaatcatctgcatacatagtcattctagctttgtgtaagaccagtggcaaatcatttgtaaaaatagagaagagtaaCGGCCCAAGGAGGCTGCCCTGAGGGACACCGCATTGTACGTATTTGATGTTggagaagcttccattgaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2420618 lncRNA downstream 63115 21705434 ~ 21705669 (-) True G2116892
TU2420615 lncRNA downstream 65169 21703405 ~ 21703615 (-) True G2116889
TU2420610 lncRNA downstream 69921 21698657 ~ 21698863 (-) True G2116884
TU2420603 lncRNA downstream 78536 21689996 ~ 21690248 (-) True G2116877
TU2420599 lncRNA downstream 85641 21682851 ~ 21683143 (-) True G2116873
TU2420729 lncRNA upstream 14530 21783528 ~ 21783798 (-) True G2117001
TU2420743 lncRNA upstream 23972 21792970 ~ 21793230 (-) True G2117015
TU2420745 lncRNA upstream 25520 21794518 ~ 21794761 (-) True G2117017
TU2421077 lncRNA upstream 99806 21868804 ~ 21869335 (-) True G2117311
TU2421080 lncRNA upstream 102477 21871475 ~ 21871837 (-) True G2117314
XM_036966443.1 mRNA downstream 15215 21707382 ~ 21753569 (-) False eif2b3
XM_021589493.2 mRNA downstream 15953 21707382 ~ 21752831 (-) False eif2b3
XM_021589492.2 mRNA downstream 67825 21665408 ~ 21700959 (-) False LOC110508734
XR_002471355.2 mRNA downstream 220823 21545240 ~ 21547961 (-) False LOC110508732
XR_005040281.1 mRNA downstream 237468 21522859 ~ 21531316 (-) False LOC110508730
XM_021589495.2 mRNA upstream 83914 21852912 ~ 21862431 (-) True plk3
XM_021589497.2 mRNA upstream 95616 21864614 ~ 21867035 (-) True LOC110508737
XM_021589498.2 mRNA upstream 104218 21873216 ~ 21876709 (-) False mrps14
XM_021589502.2 mRNA upstream 175811 21944809 ~ 21948308 (-) False LOC110508740
XM_021589503.2 mRNA upstream 175811 21944809 ~ 21948557 (-) False LOC110508740
TU2419508 other downstream 909254 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2646728 19116090 ~ 19122056 (-) True LOC110508678
TU2416904 other downstream 2759119 19007232 ~ 19009665 (-) False G2113520
TU2416913 other downstream 2760287 19007232 ~ 19008497 (-) False G2113520
TU2416849 other downstream 2808952 18958110 ~ 18959832 (-) True LOC118944847
TU2421079 other upstream 101687 21870685 ~ 21871053 (-) True G2117313
TU2421081 other upstream 104218 21873216 ~ 21876650 (-) True mrps14
TU2421094 other upstream 173983 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 173983 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 173983 21942981 ~ 21948258 (-) False LOC110508740

Expression Profile