RNA id: TU2421137



Basic Information


Item Value
RNA id TU2421137
length 706
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2117349
representative False

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21918133 ~ 21922635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGTGTGGAGCTCTTCCTGCTGACCCGGGAGCCCTTGACAGCCCAGATGTAGACTGTGTAGATGACTCCAGGCCTCAGCCCAGTCAGCCTGTAGGAGCTGCTGTCTGCTCCCACAGTGATCTCCCCACTGGAGCCCTCAGCAGAGGTGTAGCTGATCATGTAGCCGTCGATGTCCGCTAGAGGTCTGTCCCACGACACATCGGCTGTATCCTCGGTCACTTCTCTGGTCAAGAGGTTAGTAGGAGCATCCAGATCTGGAGAGACATTAGTAAATGGGTTAATATCATATTAGTGTTCCATGCTGTTATTTTTTTTCCCTCTAGGAGAAATAATGTTATGTTGCACATTTTCACAAGTGCAAAAAAAAAGGACTTTTGTGACAGGCAAAATATTTCTCTAGTAAAGATTTGTTTAGAAGTATCACAAGTATTTTGCATACAATTTACAGTCTTATATTTGAGGAATTATTCTCCAAAATCAGATTTTGTCTTGTGTTTttagacctcaaaagtggtcttcTGTTGAGATAGGTTCCCATCCCAGGCCATCAGTTTTGTAGTTCTAGCTATATGACAAACCTCTAAATGACTAGGAAAGATAAGCACCATGTAATTTCCAGCTTTGCAGTGCTTATCTTTTCTTTTAATTTGGGGTTCAGGAATGTAACTTGCTGGATCTACGCAACCAATGGCGTGGGATGTGGACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2421082 lncRNA downstream 45151 21872618 ~ 21872982 (-) True G2117316
TU2421080 lncRNA downstream 46296 21871475 ~ 21871837 (-) True G2117314
TU2421077 lncRNA downstream 48798 21868804 ~ 21869335 (-) True G2117311
TU2420745 lncRNA downstream 123372 21794518 ~ 21794761 (-) True G2117017
TU2420743 lncRNA downstream 124903 21792970 ~ 21793230 (-) True G2117015
TU2421150 lncRNA upstream 4924 21927559 ~ 21929837 (-) True G2117357
TU2421152 lncRNA upstream 11097 21933732 ~ 21933943 (-) True G2117359
TU2421157 lncRNA upstream 14845 21937480 ~ 21937682 (-) True G2117364
TU2421199 lncRNA upstream 102440 22025075 ~ 22025416 (-) True G2117406
TU2421168 lncRNA upstream 105936 22028571 ~ 22125191 (-) True tnr
XM_021589498.2 mRNA downstream 41424 21873216 ~ 21876709 (-) False mrps14
XM_021589497.2 mRNA downstream 51098 21864614 ~ 21867035 (-) True LOC110508737
XM_021589495.2 mRNA downstream 55702 21852912 ~ 21862431 (-) True plk3
XM_021589494.2 mRNA downstream 132230 21707382 ~ 21785903 (-) True eif2b3
XM_036966444.1 mRNA downstream 136905 21707382 ~ 21781228 (-) False eif2b3
XM_021589502.2 mRNA upstream 22174 21944809 ~ 21948308 (-) False LOC110508740
XM_021589503.2 mRNA upstream 22174 21944809 ~ 21948557 (-) False LOC110508740
XM_021589504.2 mRNA upstream 22174 21944809 ~ 21948557 (-) False LOC110508740
XM_021589505.2 mRNA upstream 43660 21966295 ~ 22125301 (-) False tnr
XM_021589506.2 mRNA upstream 43660 21966295 ~ 22125301 (-) False tnr
TU2421081 other downstream 41483 21873216 ~ 21876650 (-) True mrps14
TU2421079 other downstream 47080 21870685 ~ 21871053 (-) True G2117313
TU2419508 other downstream 1058603 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2796077 19116090 ~ 19122056 (-) True LOC110508678
TU2416913 other downstream 2909636 19007232 ~ 19008497 (-) False G2113520
TU2421094 other upstream 20346 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 20346 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 20346 21942981 ~ 21948258 (-) False LOC110508740
TU2421097 other upstream 20346 21942981 ~ 21948258 (-) False LOC110508740
TU2421093 other upstream 22272 21944907 ~ 21948258 (-) True LOC110508740

Expression Profile