RNA id: TU2421123


Basic Information

Item Value
RNA id TU2421123
length 565
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2117349
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 21918133 ~ 21922635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCTACAGTGGAGCTCTTCCTGCTGACCCTGGAGCCCTTGACAGCCCAAATGTAGACTGTGTAGATGACTCCAGGCCTCAGCCCAGTCAGCCTGTAGGAGCTGCTGTCTGCCCCCACAGGGATCTCCCCACTGGAGCCCTCAGCAGAGCTGTAGCTGATCATGTAGCCGTCGATGTCCGCTAGAGGTCTGTCCCACGACACATCGGCTGTATCCTCGGTCACTTCTCTGGTCAAGAGGTTAGTAGGAGCATCCAGATCTGGAGAACCATTGATATAAGGGTTAATGCTCTTCTGTGTCATGTCATGAAGTTTGATATTTAATTGACTTACTGTTTCAAGACCTGCTATACCTGAGAGAGCTGTAAATCACTGTAATTGTATAAGAGAGACTTTAAAGGAACAGTCTACACAccaaaatcaaagtttgtcagagGTTTTCAGGCCAAATAAATGGTCTAATATTGATACATAAGTCCATGTGCCTTGCCATCTGTTGTGTAGATCTAGCCATGTGCCCTCATCCCAAATCCCAAAAGAATGCAAAATATAGTCACTATCTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2421082 lncRNA downstream 46550 21872618 ~ 21872982 (-) True G2117316
TU2421080 lncRNA downstream 47695 21871475 ~ 21871837 (-) True G2117314
TU2421077 lncRNA downstream 50197 21868804 ~ 21869335 (-) True G2117311
TU2420745 lncRNA downstream 124771 21794518 ~ 21794761 (-) True G2117017
TU2420743 lncRNA downstream 126302 21792970 ~ 21793230 (-) True G2117015
TU2421150 lncRNA upstream 6291 21927559 ~ 21929837 (-) True G2117357
TU2421152 lncRNA upstream 12464 21933732 ~ 21933943 (-) True G2117359
TU2421157 lncRNA upstream 16212 21937480 ~ 21937682 (-) True G2117364
TU2421199 lncRNA upstream 103807 22025075 ~ 22025416 (-) True G2117406
TU2421168 lncRNA upstream 107303 22028571 ~ 22125191 (-) True tnr
XM_021589498.2 mRNA downstream 42823 21873216 ~ 21876709 (-) False mrps14
XM_021589497.2 mRNA downstream 52497 21864614 ~ 21867035 (-) True LOC110508737
XM_021589495.2 mRNA downstream 57101 21852912 ~ 21862431 (-) True plk3
XM_021589494.2 mRNA downstream 133629 21707382 ~ 21785903 (-) True eif2b3
XM_036966444.1 mRNA downstream 138304 21707382 ~ 21781228 (-) False eif2b3
XM_021589502.2 mRNA upstream 23541 21944809 ~ 21948308 (-) False LOC110508740
XM_021589503.2 mRNA upstream 23541 21944809 ~ 21948557 (-) False LOC110508740
XM_021589504.2 mRNA upstream 23541 21944809 ~ 21948557 (-) False LOC110508740
XM_021589505.2 mRNA upstream 45027 21966295 ~ 22125301 (-) False tnr
XM_021589506.2 mRNA upstream 45027 21966295 ~ 22125301 (-) False tnr
TU2421081 other downstream 42882 21873216 ~ 21876650 (-) True mrps14
TU2421079 other downstream 48479 21870685 ~ 21871053 (-) True G2117313
TU2419508 other downstream 1060002 20859140 ~ 20859530 (-) True G2115838
TU2417253 other downstream 2797476 19116090 ~ 19122056 (-) True LOC110508678
TU2416913 other downstream 2911035 19007232 ~ 19008497 (-) False G2113520
TU2421094 other upstream 21713 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other upstream 21713 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other upstream 21713 21942981 ~ 21948258 (-) False LOC110508740
TU2421097 other upstream 21713 21942981 ~ 21948258 (-) False LOC110508740
TU2421093 other upstream 23639 21944907 ~ 21948258 (-) True LOC110508740

Expression Profile