RNA id: TU2421606


Basic Information

Item Value
RNA id TU2421606
length 360
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G2117797
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22227659 ~ 22228018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGATAGGGATAATGACTATGGACGGGTGGTAGCCGTCCTTATGAGGACTCCAATGTTGCTCTACCTCAGAGAAGTCAGCCCAGAGAGCGAGGTTTGGTTCCCTCTTATCAATCTGAGAGCGCCCTTTCAGGAGGTCCTCGTGAGTGCGAGGAAGCACCCATAACACAATACCCCCGATGTACCCTCGGAAGTTGTGCCCAAGGTCTGACTGGTCCCCACCGAGAAGAAGTGTTCGACAGGTCTCCATGAACGGGCTGTAGAGGTTACCAGACTGCAAACGGCTCTCTGCAACCTTGGCACCATCTATGTAGAGGGTCATATTGTGACCATTGTAGCTGGCCATCAGGTGAGTCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2421602 lncRNA downstream 3806 22223560 ~ 22223853 (-) True G2117793
TU2421601 lncRNA downstream 4624 22222835 ~ 22223035 (-) True G2117792
TU2421599 lncRNA downstream 5805 22221630 ~ 22221854 (-) True G2117790
TU2421368 lncRNA downstream 13005 22214259 ~ 22214654 (-) True G2117567
TU2421353 lncRNA downstream 26729 22200522 ~ 22200930 (-) True G2117557
TU2421607 lncRNA upstream 124 22228142 ~ 22228388 (-) True G2117798
TU2421616 lncRNA upstream 11514 22239532 ~ 22239749 (-) True G2117807
TU2421651 lncRNA upstream 20330 22248348 ~ 22248618 (-) True G2117821
TU2421653 lncRNA upstream 22174 22250192 ~ 22250405 (-) True G2117823
TU2421660 lncRNA upstream 33284 22261302 ~ 22261524 (-) True G2117830
XM_021589509.2 mRNA downstream 15233 22202448 ~ 22212426 (-) True cop1
XM_021589508.2 mRNA downstream 15234 22202448 ~ 22212425 (-) False cop1
XM_021589505.2 mRNA downstream 102358 21966295 ~ 22125301 (-) False tnr
XM_036965985.1 mRNA upstream 58648 22286666 ~ 22527070 (-) False astn1
XM_036965978.1 mRNA upstream 58648 22286666 ~ 22527071 (-) False astn1
XM_036965981.1 mRNA upstream 58648 22286666 ~ 22527071 (-) False astn1
XM_036965980.1 mRNA upstream 58648 22286666 ~ 22527072 (-) False astn1
XM_036965982.1 mRNA upstream 58648 22286666 ~ 22527072 (-) False astn1
TU2421094 other downstream 279401 21942981 ~ 21948258 (-) False LOC110508740
TU2422040 other upstream 366515 22594533 ~ 22607806 (-) True G2118200
TU2423555 other upstream 1096983 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2436856 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2502656 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2916044 25144062 ~ 25148520 (-) True G2121444

Expression Profile