RNA id: TU2421616



Basic Information


Item Value
RNA id TU2421616
length 218
lncRNA type intronic
GC content 0.51
exon number 1
gene id G2117807
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22239532 ~ 22239749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctggacaagaggaacaactatgtgagaatactgttaattgactacagctcagtgttcaacaccatagtgccttcctagctcatcactaagctcaggaccctgggactgaacacctccctctgcaactggatcctccGGTCTTCCTAACCAGGCTGTCCCCagttggtgagggtaggcaacaacacattccCCACACTGACTCTAAACATGGGTGCGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2421607 lncRNA downstream 11144 22228142 ~ 22228388 (-) True G2117798
TU2421606 lncRNA downstream 11514 22227659 ~ 22228018 (-) True G2117797
TU2421602 lncRNA downstream 15679 22223560 ~ 22223853 (-) True G2117793
TU2421601 lncRNA downstream 16497 22222835 ~ 22223035 (-) True G2117792
TU2421599 lncRNA downstream 17678 22221630 ~ 22221854 (-) True G2117790
TU2421651 lncRNA upstream 8599 22248348 ~ 22248618 (-) True G2117821
TU2421653 lncRNA upstream 10443 22250192 ~ 22250405 (-) True G2117823
TU2421660 lncRNA upstream 21553 22261302 ~ 22261524 (-) True G2117830
TU2421673 lncRNA upstream 38648 22278397 ~ 22280880 (-) True G2117840
TU2421868 lncRNA upstream 304912 22544661 ~ 22544893 (-) True G2118030
XM_021589509.2 mRNA downstream 27106 22202448 ~ 22212426 (-) True cop1
XM_021589508.2 mRNA downstream 27107 22202448 ~ 22212425 (-) False cop1
XM_021589505.2 mRNA downstream 114231 21966295 ~ 22125301 (-) False tnr
XM_036965985.1 mRNA upstream 46917 22286666 ~ 22527070 (-) False astn1
XM_036965978.1 mRNA upstream 46917 22286666 ~ 22527071 (-) False astn1
XM_036965981.1 mRNA upstream 46917 22286666 ~ 22527071 (-) False astn1
XM_036965980.1 mRNA upstream 46917 22286666 ~ 22527072 (-) False astn1
XM_036965982.1 mRNA upstream 46917 22286666 ~ 22527072 (-) False astn1
TU2421094 other downstream 291274 21942981 ~ 21948258 (-) False LOC110508740
TU2422040 other upstream 354784 22594533 ~ 22607806 (-) True G2118200
TU2423555 other upstream 1085252 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2425125 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2490925 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2904313 25144062 ~ 25148520 (-) True G2121444

Expression Profile