RNA id: TU2422040



Basic Information


Item Value
RNA id TU2422040
length 615
RNA type TUCP
GC content 0.53
exon number 2
gene id G2118200
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22594533 ~ 22607806 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGCTATTTTGAGAACAAACTGCGATGCGCAACAACATCCCTTAGCCACATAGCCTAGAGCAAAGTGCCACTGAGTCGGTGTATGTGAAGCTGCTTACCTCCTAGCGTAGCAGACACCAGAAAGTGTGTCCCATATTTCTTGATCAAGTTCTCGTGGATCTGCTGCAGACTTGGCCTTCGACCGAGCAGCCTCAGGTTGCGTAGAAACTCCGGCGCCAGTGGCAAGGGGGCCTTAAAAACGTCCCTCTTCTCTGTAGCCAAGCTGTTTACTTTCCAATGGCTGAATTCCCTGCAAGTGAACCTGTAGATCTTATAGCGTGTGGAGAAGCCTTGCTGGAAGCGTTCTTTGAACTCTGTGTATTCCGGACAACGGTGGAAAGGTCCCTTCTCAGACAGCAGCCAATCCAATTGGTCGCCACTCTGGTGTCCGGTGCTGGCAGCTGTAAGCGAGGGGTTGTTACTCTGCTGCCCCTCAGCCAGGGCCAGAACCCAGCCGAGGTGGCCCAGCACTGTCCACTGCCATACGAGCATCAACAGCAACCATCTAACAGCTGTGGCTCTTGGCCAACGCATCACCATCTTCCTGTTGGGCACCTGGGACCAGCATTCTTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2421868 lncRNA downstream 49640 22544661 ~ 22544893 (-) True G2118030
TU2421673 lncRNA downstream 313653 22278397 ~ 22280880 (-) True G2117840
TU2421660 lncRNA downstream 333009 22261302 ~ 22261524 (-) True G2117830
TU2421653 lncRNA downstream 344128 22250192 ~ 22250405 (-) True G2117823
TU2421651 lncRNA downstream 345915 22248348 ~ 22248618 (-) True G2117821
TU2422097 lncRNA upstream 66858 22674664 ~ 22674929 (-) True G2118250
TU2422098 lncRNA upstream 69391 22677197 ~ 22677415 (-) True G2118251
TU2422208 lncRNA upstream 184613 22792419 ~ 22792756 (-) True G2118359
TU2422244 lncRNA upstream 186285 22794091 ~ 22794319 (-) True G2118394
TU2423189 lncRNA upstream 194030 22801836 ~ 22803785 (-) True G2119243
XM_036965986.1 mRNA downstream 67452 22288165 ~ 22527081 (-) True astn1
XM_036965976.1 mRNA downstream 67460 22286666 ~ 22527073 (-) False astn1
XM_036965977.1 mRNA downstream 67460 22286666 ~ 22527073 (-) False astn1
XM_036965979.1 mRNA downstream 67460 22286666 ~ 22527073 (-) False astn1
XM_036965980.1 mRNA downstream 67461 22286666 ~ 22527072 (-) False astn1
XM_021589527.2 mRNA upstream 187833 22795639 ~ 22816740 (-) False dars2
XM_036967134.1 mRNA upstream 187833 22795639 ~ 22816743 (-) True dars2
XM_021589528.2 mRNA upstream 214266 22822072 ~ 22828641 (-) True LOC110508750
XM_021589533.2 mRNA upstream 326454 22934260 ~ 22939565 (-) True LOC110508754
XM_021589537.2 mRNA upstream 434732 23042538 ~ 23055346 (-) True nmnat2
TU2421094 other downstream 646275 21942981 ~ 21948258 (-) False LOC110508740
TU2421095 other downstream 646275 21942981 ~ 21948258 (-) False LOC110508740
TU2421096 other downstream 646275 21942981 ~ 21948258 (-) False LOC110508740
TU2421097 other downstream 646275 21942981 ~ 21948258 (-) False LOC110508740
TU2421093 other downstream 646275 21944907 ~ 21948258 (-) True LOC110508740
TU2423555 other upstream 717195 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 2057068 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2122868 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2536256 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2590442 25198248 ~ 25274626 (-) True G2121457

Expression Profile