RNA id: TU2422098


Basic Information

Item Value
RNA id TU2422098
length 219
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2118251
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22677197 ~ 22677415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtttaaatatattttgctaaagtgtatgtaaacttccgactttaactgtaagtctccaacttcaactgtaagtctccaacttcagtgatttttgcaattcgttccagtcactggcagcagagaacttgaaggaaaggcggccaaagaaggtgtttgctttggggatgaccagttcttattatctgctaagtcattacaattataactggcattactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2422097 lncRNA downstream 2268 22674664 ~ 22674929 (-) True G2118250
TU2422033 lncRNA downstream 75545 22585748 ~ 22601652 (-) True G2118194
TU2421868 lncRNA downstream 132304 22544661 ~ 22544893 (-) True G2118030
TU2421673 lncRNA downstream 396317 22278397 ~ 22280880 (-) True G2117840
TU2421660 lncRNA downstream 415673 22261302 ~ 22261524 (-) True G2117830
TU2422208 lncRNA upstream 115004 22792419 ~ 22792756 (-) True G2118359
TU2422244 lncRNA upstream 116676 22794091 ~ 22794319 (-) True G2118394
TU2423189 lncRNA upstream 124421 22801836 ~ 22803785 (-) True G2119243
TU2423183 lncRNA upstream 227769 22905184 ~ 22907635 (-) True G2119237
TU2423354 lncRNA upstream 355638 23033053 ~ 23038249 (-) True G2119393
XM_036965986.1 mRNA downstream 150116 22288165 ~ 22527081 (-) True astn1
XM_036965976.1 mRNA downstream 150124 22286666 ~ 22527073 (-) False astn1
XM_036965977.1 mRNA downstream 150124 22286666 ~ 22527073 (-) False astn1
XM_036965979.1 mRNA downstream 150124 22286666 ~ 22527073 (-) False astn1
XM_036965984.1 mRNA downstream 150125 22286666 ~ 22527072 (-) False astn1
XM_021589527.2 mRNA upstream 118224 22795639 ~ 22816740 (-) False dars2
XM_036967134.1 mRNA upstream 118224 22795639 ~ 22816743 (-) True dars2
XM_021589528.2 mRNA upstream 144657 22822072 ~ 22828641 (-) True LOC110508750
XM_021589533.2 mRNA upstream 256845 22934260 ~ 22939565 (-) True LOC110508754
XM_021589537.2 mRNA upstream 365123 23042538 ~ 23055346 (-) True nmnat2
TU2422040 other downstream 69391 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 728939 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 647586 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1987459 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 2053259 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2466647 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2520833 25198248 ~ 25274626 (-) True G2121457

Expression Profile