RNA id: TU2423189



Basic Information


Item Value
RNA id TU2423189
length 331
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2119243
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 22801836 ~ 22803785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAAAATAGCAGAATCCGCTAATTTTAACGGGTGtttacatacttttgtatatatagtgtacatatagttgcatcggcaggacagaacgtCCGGTAAGATCAcagggggtggtgtgtgtctctttgttaagaACAGTTGGTAcacaatctctaatattaagaaAGTCTCAAggttctacttgcctgagttagaatacctcatgataagctgtagaccatactatttaccaagagttttcatctgtatttttcgtagctgtctatttagcATCCCAAACCGGTGCTGGCGCTAAGAcctcactcaacgagctgtatagggccataagcaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2422244 lncRNA downstream 7517 22794091 ~ 22794319 (-) True G2118394
TU2422208 lncRNA downstream 9080 22792419 ~ 22792756 (-) True G2118359
TU2422098 lncRNA downstream 124421 22677197 ~ 22677415 (-) True G2118251
TU2422097 lncRNA downstream 126907 22674664 ~ 22674929 (-) True G2118250
TU2422033 lncRNA downstream 200184 22585748 ~ 22601652 (-) True G2118194
TU2423183 lncRNA upstream 101399 22905184 ~ 22907635 (-) True G2119237
TU2423354 lncRNA upstream 229268 23033053 ~ 23038249 (-) True G2119393
TU2423355 lncRNA upstream 229445 23033230 ~ 23038411 (-) True G2119394
TU2423358 lncRNA upstream 229986 23033771 ~ 23039094 (-) True G2119395
TU2423362 lncRNA upstream 233025 23036810 ~ 23041327 (-) True G2119398
XM_036965986.1 mRNA downstream 274755 22288165 ~ 22527081 (-) True astn1
XM_036965976.1 mRNA downstream 274763 22286666 ~ 22527073 (-) False astn1
XM_036965977.1 mRNA downstream 274763 22286666 ~ 22527073 (-) False astn1
XM_036965979.1 mRNA downstream 274763 22286666 ~ 22527073 (-) False astn1
XM_036965984.1 mRNA downstream 274764 22286666 ~ 22527072 (-) False astn1
XM_021589528.2 mRNA upstream 18287 22822072 ~ 22828641 (-) True LOC110508750
XM_021589533.2 mRNA upstream 130475 22934260 ~ 22939565 (-) True LOC110508754
XM_021589537.2 mRNA upstream 238753 23042538 ~ 23055346 (-) True nmnat2
XM_036966220.1 mRNA upstream 300286 23104071 ~ 23118255 (-) False LOC110508760
XM_021589542.2 mRNA upstream 300286 23104071 ~ 23118323 (-) True LOC110508760
TU2422040 other downstream 194030 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 853578 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 521216 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1861089 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1926889 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2340277 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2394463 25198248 ~ 25274626 (-) True G2121457

Expression Profile