RNA id: TU2423362



Basic Information


Item Value
RNA id TU2423362
length 967
lncRNA type antisense_over
GC content 0.48
exon number 4
gene id G2119398
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23036810 ~ 23041327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGACCTCTGctgctctgtctttctgtatctcAGCGTTAGCCTTCTCTGCGGCCACTTTGGCCACAGTGGCCACTGCCTGCTTCTGCAGACCCTGCATGTCCTCTTTCAGCTTGGTGGCGTCCTTCAACAGACCAGCAGGAGGAACTGGTAAAGAGCCGGACATTCCCTCCAGTCGAGAGACCACAGCTTCCAGGCTGCTGACAGTGCCCAGTGCATCATTGTAGTCTCCAGACACACTGCCTATGATGAATAGGGTCTCTGAGTTGTTGCCAACAGCTTGATGAATGGTGGCGTTGATGCCAGGGAGTTTCTTTATGGCCTCGTCAGCCAATGCCTTGTTCTTGTTGATCTGGCCATCAAACCCTCTTAGCATCTCCAGTACATTATCCACCCCATCAATATTATCTGTGATATCCTTCAGGGCCAGTTCTGTGTCAGCCTTCGCATGATTTGCTCTGCCAAGAAGCTGGTCATATTTCTGTTGAGCTGCCTTCCCCTGGGCCAGAAGATCCTCTACTGCGGCTTTGTCCTCCTGGGTGTCCTCTTGCAGTGCCTGGTACGCTGTTAGGTTCTTCTCCACCCGTTCTCTCAGGCCATCCAATTTAGCCAACACACTGTCAATGTCCTTCTGCCAGAAAAATAAGCTCAGTCAGACTCAGTGTGTTGTGCAAGTGTAATTACATATGCTCACAAATCTGTGGGGAACTGCCCTAGATTCCTCACCAGCCAGGTTTTAATTAGGTCGTCCCACCATGCATTTTTTGCTGACTCATGTTCTTGATCATTAATTCCTTTGTTGTGTTTAAATGTAGCTTAGCAAGGAAACGATTTAGAGATCTAGCTTGACAGACATGCCTTGAGACAGGTTCAGCTGCCAATAGTTGTTCATAGTGAAAGGCGTTCATAGTGAAAGGTGTTGAAATTGAATGTCTTTATCTCCTTCATTTCCAGGACCCAGACACTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2423183 lncRNA downstream 129175 22905184 ~ 22907635 (-) True G2119237
TU2423189 lncRNA downstream 233025 22801836 ~ 22803785 (-) True G2119243
TU2422244 lncRNA downstream 242491 22794091 ~ 22794319 (-) True G2118394
TU2422208 lncRNA downstream 244054 22792419 ~ 22792756 (-) True G2118359
TU2422098 lncRNA downstream 359395 22677197 ~ 22677415 (-) True G2118251
TU2423402 lncRNA upstream 50996 23092323 ~ 23174530 (-) True G2119432
TU2423553 lncRNA upstream 276251 23317578 ~ 23319702 (-) False LOC110508185
TU2423703 lncRNA upstream 570695 23612022 ~ 23613195 (-) True G2119699
TU2423778 lncRNA upstream 686786 23728113 ~ 23732967 (-) True G2119766
TU2423808 lncRNA upstream 739626 23780953 ~ 23781185 (-) True G2119795
XM_021589533.2 mRNA downstream 97245 22934260 ~ 22939565 (-) True LOC110508754
XM_021589528.2 mRNA downstream 208169 22822072 ~ 22828641 (-) True LOC110508750
XM_036967134.1 mRNA downstream 220067 22795639 ~ 22816743 (-) True dars2
XM_021589527.2 mRNA downstream 220070 22795639 ~ 22816740 (-) False dars2
XM_036965986.1 mRNA downstream 509729 22288165 ~ 22527081 (-) True astn1
XM_021589537.2 mRNA upstream 1211 23042538 ~ 23055346 (-) True nmnat2
XM_036966220.1 mRNA upstream 62744 23104071 ~ 23118255 (-) False LOC110508760
XM_021589542.2 mRNA upstream 62744 23104071 ~ 23118323 (-) True LOC110508760
XM_021589545.2 mRNA upstream 102892 23144219 ~ 23154829 (-) True LOC110508762
XM_036966426.1 mRNA upstream 118829 23160156 ~ 23183512 (-) False LOC110508763
TU2422040 other downstream 429004 22594533 ~ 22607806 (-) True G2118200
TU2421095 other downstream 1088552 21942981 ~ 21948258 (-) False LOC110508740
TU2423555 other upstream 283674 23325001 ~ 23329615 (-) True LOC110508185
TU2424934 other upstream 1623547 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 1689347 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 2102735 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 2156921 25198248 ~ 25274626 (-) True G2121457

Expression Profile