RNA id: TU2423809


Basic Information

Item Value
RNA id TU2423809
length 432
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G2119796
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 23782552 ~ 23782983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttacccctttttctccccaatttcgtggtatccaattgtttttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaacccaaccaagccgcactgcttcttaacacagcgccatccaacccggaagccagccgcaccaatgtgtcggaggaaacactgtgcaccttggttagcacgcactgcgcccggcccaccacaggagtcgctagtgcgacaaggatttccctaccggccaaaccctccctaacccggacgacgctaggccaattgtgcgtcaccccacggacctcccggttgtggccggttacgacagagcctgggcgtgaactcAGAGTCTCTGGtagcacagctggcgctgcagccCCTAACCACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2423808 lncRNA downstream 1367 23780953 ~ 23781185 (-) True G2119795
TU2423778 lncRNA downstream 49585 23728113 ~ 23732967 (-) True G2119766
TU2423703 lncRNA downstream 169357 23612022 ~ 23613195 (-) True G2119699
TU2423553 lncRNA downstream 462850 23317578 ~ 23319702 (-) False LOC110508185
TU2423402 lncRNA downstream 608022 23092323 ~ 23174530 (-) True G2119432
TU2423855 lncRNA upstream 74061 23857044 ~ 23858007 (-) True G2119831
TU2424084 lncRNA upstream 397236 24180219 ~ 24180498 (-) True G2120036
TU2424745 lncRNA upstream 578721 24361704 ~ 24361903 (-) True G2120613
TU2424747 lncRNA upstream 581584 24364567 ~ 24366627 (-) True G2120615
TU2424936 lncRNA upstream 881891 24664874 ~ 24669566 (-) True LOC110508783
XM_036966917.1 mRNA downstream 28960 23692367 ~ 23753592 (-) True LOC110508186
XM_036966916.1 mRNA downstream 40736 23692367 ~ 23741816 (-) False LOC110508186
XM_036966918.1 mRNA downstream 40736 23692367 ~ 23741816 (-) False LOC110508186
XM_021589575.2 mRNA downstream 143009 23590037 ~ 23639543 (-) False LOC110508771
XM_036967145.1 mRNA upstream 4871 23787854 ~ 24045481 (-) False LOC110508187
XM_036967140.1 mRNA upstream 4871 23787854 ~ 24045482 (-) False LOC110508187
XM_036967141.1 mRNA upstream 4871 23787854 ~ 24045482 (-) False LOC110508187
XM_036967142.1 mRNA upstream 4871 23787854 ~ 24045482 (-) False LOC110508187
XM_036967144.1 mRNA upstream 4871 23787854 ~ 24045482 (-) False LOC110508187
TU2423555 other downstream 452937 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 1174746 22594533 ~ 22607806 (-) True G2118200
TU2421096 other downstream 1834294 21942981 ~ 21948258 (-) False LOC110508740
TU2424934 other upstream 881891 24664874 ~ 24669566 (-) False LOC110508783
TU2424996 other upstream 947691 24730674 ~ 24734987 (-) True G2120836
TU2425635 other upstream 1361079 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 1415265 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 2084318 25867301 ~ 26069209 (-) True LOC110508791

Expression Profile