RNA id: TU2425163


Basic Information

Item Value
RNA id TU2425163
length 419
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2120993
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 24950530 ~ 24950948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatcatgaagtggaacgacatttattggatatttcaaatttttttaacaaatgaaaaactgaaaaattgggcgtgtaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagttggggtatgtctctatcagttttgcacatcgagagacagaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcatgtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2425152 lncRNA downstream 9275 24940881 ~ 24941255 (-) True G2120982
TU2425098 lncRNA downstream 85325 24863091 ~ 24865205 (-) True G2120928
TU2425099 lncRNA downstream 86534 24863627 ~ 24863996 (-) True G2120929
TU2424936 lncRNA downstream 280964 24664874 ~ 24669566 (-) True LOC110508783
TU2424747 lncRNA downstream 583903 24364567 ~ 24366627 (-) True G2120615
TU2425544 lncRNA upstream 53468 25004416 ~ 25014010 (-) False G2121361
TU2425545 lncRNA upstream 53468 25004416 ~ 25010336 (-) True G2121361
TU2425579 lncRNA upstream 153106 25104054 ~ 25108200 (-) True G2121395
TU2425603 lncRNA upstream 166561 25117509 ~ 25117732 (-) True G2121417
TU2425632 lncRNA upstream 205229 25156177 ~ 25157733 (-) True G2121441
XM_036966397.1 mRNA downstream 273378 24664869 ~ 24677152 (-) False LOC110508783
XM_021589598.2 mRNA downstream 273379 24664869 ~ 24677151 (-) False LOC110508783
XM_021589599.2 mRNA downstream 280901 24664869 ~ 24669629 (-) False LOC110508783
XM_021589597.2 mRNA downstream 292663 24628922 ~ 24657867 (-) False LOC110508781
XM_021589613.2 mRNA upstream 264394 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA upstream 264394 25215342 ~ 25232530 (-) True LOC110508788
XM_036966783.1 mRNA upstream 393502 25344450 ~ 25365071 (-) False LOC110508789
XM_036966784.1 mRNA upstream 393502 25344450 ~ 25412332 (-) True LOC110508789
XM_036966015.1 mRNA upstream 731370 25682318 ~ 26069267 (-) False LOC110508791
TU2424996 other downstream 215543 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 280964 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 1620915 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 2342724 22594533 ~ 22607806 (-) True G2118200
TU2421093 other downstream 3002272 21944907 ~ 21948258 (-) True LOC110508740
TU2425635 other upstream 193114 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 247300 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 916353 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 995785 25946733 ~ 25950453 (-) True G2122515
TU2429842 other upstream 3593993 28544941 ~ 28551514 (-) False G2125203

Expression Profile