RNA id: TU2425579



Basic Information


Item Value
RNA id TU2425579
length 3113
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2121395
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25104054 ~ 25108200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTCTTTGGAATGTAGTAGTCATTGATCAAAGTCAGAAACAACATAGACAGATGGGTCTTGAAGCTGACCAGGgagtcaaatggcaccctattccctacatcgtgcactacttttgaccagagctctataggtgcactatatagggaatagggacatTTGGGACGGAGTCCAAGTAAAGAAACATTACTTGAGTCATTAAGGCCTCAACTGCTTAcgtattttttctttttttatctgGGACTGCAAATTACAGAAGCAGTATTGAAAATGGAACATTTTGTAGAAAAAAAAATGGCACAGACATTTGTGACCGTACAAAAAACACAAGGTGATATAACATACCAAGTTAAACATTACGTAAGTAAAGAGACATGTATAGCTTTTTCAATAACGAAAAACATCTCCATAATTGTACATTTCAGAACTATATCATCTGAAACCATATAAAAGAGTTATCTGTAACACTGTCTTATCCTTCTTttgctttctttctcttttttcacAAGTGAATATCATAAACAACACAAAGATCTTTTAAATATATCAGTGCAACATTGTTTTCACATCTAGTGCTGCAGCATCCTTTCCTGTTGACGAAGACAACACCAAAACATTATGCCTTTACAAGGGGtggaaccatagaaatagaatgactcaTTTGAATTCCAATCATTCTAATCCTATGGAATGTGGAATACTGTTGTGAGCTCGAAGCAGAACTATGAAACAGCTGTTTAACTAGCTACAACCGCATGAGGAAAACATGAAGGAATCTAAACATAGAAGCTCATAGACCCCGTCGGAAGGAATAAGCTACATCACATCCATTGATTAAACTTTGGACCTATGTCTTCGCCATTTCATACAGTGCTTTGTTTTGGCTGAACTCTTCACGTTAACATTCAATACAGACAAAAAGGAGAGCAAAGGggatgtaggctacagtacataaaaacagcatgatgACACACGGGTCTCTTTCATTCCATCAAGGGCCATCATTCTACCACAGACATGTAGGGCCGGTTTCCCAGACATAGGTTAAGCCTAGTCCAGGACTTGAAAGCATTCTCAAAGAGATTCTGAATCTATGTCTGAGAAACTGGCCCATAATGTCCCAGGTATTGTCATAGCATTTTCTTCGTAGAGATGCTTCAGCCACCCAGTCTGTTGTCTGACTACGTCTCAAATACCACCATATtccatatatagtacactacttttgtatagcccatagggctctggtagaaagtagtgcactctttagggaatagggtgtcattttggacacTTCACTCTCTCCTTGTTAGGCCTTTGTAGCCAATTGTTGCCCCTATTAATAAGGCTCAATACTGATGATCATGGCTGAATCCGAACATCTCTCAAAAGGCCATAACCATTGGCTTTAATAACCCTCATTTCCCAGGCAGCATTGGGAGAGCACCAATGGAACATAACAACACAAAATGCCTGTTACATACATGATGACAGCCAGAAAACATTGCCTATGATACATAAACCACAAAGAAAGGATACTGCAGCATTTTGTCTCTTTTTATAAAGGCGCTCAAATATATTAAAACCTATGTACAATAAGTTGGATGTGTCATGTGCTATGGAGGGATGGCATGGACTCCTGCCAATCTGAACCTGCTCTACCAACCTAACGTACTGCTATGATCAAAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAAAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAATCAGACTCTACCAGCTGATGCCTAACGTACTGCATTGATCAGAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAACAGAATCAGACTCTACAAGTCGATGCCTAACGTACTGCTATGATCAGAACAGAATCAGACTCCACCAGCAGATACCTAACATACTGCTATGATCAGAATCAGACTCCACCAGCCGATGcctaacatactgctgtgatCAGAACAGAATCAGACTCCACCAGCCGTTGCCTTACATACTGCTATGATCAGAATCAGAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAATCAGACTCTACCAGCCGATGCCTAACGTACTGCTATGATCAGAACAGAATCAGTGGAGAAAAGGCAACAGAAACTTTCAAAAAGGCACTGTGGAACTAGACACAGGTCTAGGGCCAGGGCAAGCACCCTCTGgatgcatacacacatgcatgcacatacacttgctcacgcacgcacatgcatgcgtacatgcacgcacacacacgcacaaacaagaTGCACAAATCGATGCAGACATACAAACTGATAACATGGCCAGCCGAAGAGCCACGTGTCAGGATAGTGAATATACGTTTCTATGCTCTTTCTGTGAATAATAATGACCTctgatgaaaaataaaatatccttccgaaagaaaaataacaaaaacatgataAATATTTCCATCTCAATTGGTCTCATCACCAGCATCTGATTACAGAAAAACAAAGCACGtcgcaaaacaaacaaaaaacaaaacaatcatTTTTGCTGTACACGTTTTATTTATACACAGTGCCCACTACGGGTAGGTTCCTTTCACTGCAGCTCCTGAGAATAGCATGGCTCAGTCACAACCTCCCACCATCACTATAGCcagctgcatcccaaatgccaccctatcccctacatagtgcactatataaggaataggacAACACTTCAGTCACAACTCACAACCCTCTGTCCGGTGGTCTAGTTCCTCCAGCCATGAGGCTGCTTGTGTTCTCTTCCCTCAAAGGATGACGCTCATGCCTCTGAGTAGCTGTTCTGTGCATTCAGCTTGCTGTCCTTCTTTAGCTTGACGCCGTCCACCAGCTCAAAGTTATAGTTCTCCAGAGCCGACAAGTTCCTGCTGTCGGACATGTGTCCGTGCGAGCAGGCACAGTAGAGGACGACACCACAGATAGCTCCCAGGAAAACCCCTAGTGCGCTCATAGCGATGATGGTGATGAGAATGGGGTCCAGGGTTTTCAGCATGTTGCCTGGGCCACCCAGCTCGCTATTCTCCACTTCCTCTGGGTAGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2425544 lncRNA downstream 90044 25004416 ~ 25014010 (-) False G2121361
TU2425545 lncRNA downstream 93718 25004416 ~ 25010336 (-) True G2121361
TU2425163 lncRNA downstream 153106 24950530 ~ 24950948 (-) True G2120993
TU2425152 lncRNA downstream 162799 24940881 ~ 24941255 (-) True G2120982
TU2425098 lncRNA downstream 238849 24863091 ~ 24865205 (-) True G2120928
TU2425603 lncRNA upstream 9309 25117509 ~ 25117732 (-) True G2121417
TU2425632 lncRNA upstream 47977 25156177 ~ 25157733 (-) True G2121441
TU2425629 lncRNA upstream 93714 25201914 ~ 25203317 (-) True G2121438
TU2425625 lncRNA upstream 100888 25209088 ~ 25212487 (-) False G2121436
TU2425626 lncRNA upstream 100888 25209088 ~ 25212487 (-) True G2121436
XM_036966397.1 mRNA downstream 426902 24664869 ~ 24677152 (-) False LOC110508783
XM_021589598.2 mRNA downstream 426903 24664869 ~ 24677151 (-) False LOC110508783
XM_021589599.2 mRNA downstream 434425 24664869 ~ 24669629 (-) False LOC110508783
XM_021589597.2 mRNA downstream 446187 24628922 ~ 24657867 (-) False LOC110508781
XM_021589613.2 mRNA upstream 107142 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA upstream 107142 25215342 ~ 25232530 (-) True LOC110508788
XM_036966783.1 mRNA upstream 236250 25344450 ~ 25365071 (-) False LOC110508789
XM_036966784.1 mRNA upstream 236250 25344450 ~ 25412332 (-) True LOC110508789
XM_036966015.1 mRNA upstream 574118 25682318 ~ 26069267 (-) False LOC110508791
TU2424996 other downstream 369067 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 434488 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 1774439 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 2496248 22594533 ~ 22607806 (-) True G2118200
TU2421093 other downstream 3155796 21944907 ~ 21948258 (-) True LOC110508740
TU2425635 other upstream 35862 25144062 ~ 25148520 (-) True G2121444
TU2425648 other upstream 90048 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 759101 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 838533 25946733 ~ 25950453 (-) True G2122515
TU2429842 other upstream 3436741 28544941 ~ 28551514 (-) False G2125203

Expression Profile