RNA id: TU2425632


Basic Information

Item Value
RNA id TU2425632
length 1536
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G2121441
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25156177 ~ 25157733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaatttcagggatcttttatttcagctcatgaaacatgggaccaacactttacacatAGCATTaatattttagttcagtatagttcatagatcaataagaaagagttccaatcctctcttcctttccccaCTTTGACCACTCCCAGACAATAACAAtttttgcttgagaaattgctcttcgcTAAGAAGCTTTTTATTTGTTTTTgatcattttaattgaaaacaatcacttaattgttacccagaaatgattggatattgagataaaaacagctgcattggacctttaactgtAGAACATGTGGGTAGCATAAGATGGGCAGTGAGTAGAAAGCTGGATTCCCTGAACATTCCCTGGACATAGTAACCTTGGATACATTCCACTGGATTCTCTCTAACAGTAAGACAAAGCAAGGACACATTAAACAATAATTAACACACACGCATGCAGCATGTAGCAATGTTAGGGTAATTTGTATTGGAACTTTATTTAATAAATTATTTTAGAAATAAAGTATTGCAAAATGTGAatttgatgaaataaaaatacccTTTAAAAACAAAGAGCATGGCGTGTTCTTACAACTAAGTGGGATGTTTGAACTTTTACAAAGATCTGACTGACGTCATTCCCATAACACTGATGTTTATAACTGAAATGTAATTACAATTATTCAACGGAAGACGAGTTTGATCAAACCATCAAATTAGAAATGGATTAAGGTGAGAATGATTTGACAGCAAAAAAAACATTCAGAACCCCATTCAGAATTACATTTCTGTAACTGAAACAAAACACTTAAAACGAGAAGGCAGTGAGTTATGTCATATTTGGCATTGTTATTAATGAGGAGTTTAATAGGGACCTGAGTCTTCTTTAAAACAAAAAAATTTAAACCTGAAACCCATAATACCACTACTGTACTTGATGTAATTTCATTTATAAAGATTCACAAATATCGTGACAACCCCCAAAAATGATTAAACTGATTGTTCAGGTTGAAGAAAGTCATTGAAAAGAAACATACCTTTGCTTCCAGACTTTTTCTATCACTAAAATATGGCTTAGACAGAATCCATTGCCTACAAACTGTACACATAACAATTTATTGCTGTCCCAATGGTCAGCTATCGCTACATATCTTGTCCAATATCGACATCCAATTTCACTCTCAAAACAGAAAGAATGGCTCCACAGTTCTTTGAAAGGCACAACCTCACCTTCAATGACCCTACCAATCCAGTGGCAAAAATTCAGTTTTAAAGGATTCTCTCAAGTTCCACAAACAAGTTAAAACCCAAGTTTATACATACTGTACAATTCAAACAATGCATAGAAAAAGCAGTTAGTAAAACATACTGAAATAGTGGCTAAATGCCCTGCTATTATTTGGCAACTAAAAAAACAAAGTGAACATAAAAACACCCCTCCTTCCATATTCTTTtgcatacagtgttgtaatgacaGAGGAAGCTCCATCATTTGCCCTCGTATTTTGGATTGAAAACAGTTGTTACGGCACTCTTGTAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2425603 lncRNA downstream 38445 25117509 ~ 25117732 (-) True G2121417
TU2425579 lncRNA downstream 47977 25104054 ~ 25108200 (-) True G2121395
TU2425544 lncRNA downstream 142167 25004416 ~ 25014010 (-) False G2121361
TU2425545 lncRNA downstream 145841 25004416 ~ 25010336 (-) True G2121361
TU2425163 lncRNA downstream 205229 24950530 ~ 24950948 (-) True G2120993
TU2425629 lncRNA upstream 44181 25201914 ~ 25203317 (-) True G2121438
TU2425625 lncRNA upstream 51355 25209088 ~ 25212487 (-) False G2121436
TU2425626 lncRNA upstream 51355 25209088 ~ 25212487 (-) True G2121436
TU2425748 lncRNA upstream 171709 25329442 ~ 25330859 (-) True G2121549
TU2425780 lncRNA upstream 239879 25397612 ~ 25397848 (-) True G2121580
XM_036966397.1 mRNA downstream 479025 24664869 ~ 24677152 (-) False LOC110508783
XM_021589598.2 mRNA downstream 479026 24664869 ~ 24677151 (-) False LOC110508783
XM_021589599.2 mRNA downstream 486548 24664869 ~ 24669629 (-) False LOC110508783
XM_021589597.2 mRNA downstream 498310 24628922 ~ 24657867 (-) False LOC110508781
XM_021589613.2 mRNA upstream 57609 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA upstream 57609 25215342 ~ 25232530 (-) True LOC110508788
XM_036966783.1 mRNA upstream 186717 25344450 ~ 25365071 (-) False LOC110508789
XM_036966784.1 mRNA upstream 186717 25344450 ~ 25412332 (-) True LOC110508789
XM_036966015.1 mRNA upstream 524585 25682318 ~ 26069267 (-) False LOC110508791
TU2425635 other downstream 7657 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 421190 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 486611 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 1826562 23325001 ~ 23329615 (-) True LOC110508185
TU2422040 other downstream 2548371 22594533 ~ 22607806 (-) True G2118200
TU2425648 other upstream 40515 25198248 ~ 25274626 (-) True G2121457
TU2426633 other upstream 709568 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 789000 25946733 ~ 25950453 (-) True G2122515
TU2429842 other upstream 3387208 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 3387208 28544941 ~ 28551514 (-) True G2125203

Expression Profile