RNA id: TU2425780


Basic Information

Item Value
RNA id TU2425780
length 237
lncRNA type intronic
GC content 0.43
exon number 1
gene id G2121580
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25397612 ~ 25397848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTAATAGCGTTTTATTGGACATTTTTAAAGGGACATGTTTGCTTGGCAAGCAATAGAATGGGGCCTATAGATTGTTTATTGACTCTGGGTTGTGTAATGTCTGCGTCCAACTCACACTCCCAAACACTTAGATCCTCAGAAagcagcccactttccagctcactctTCAGATCCCAATCATcggaattctaatcacctgttcacacacctgcatGTCATACTCCCACTCTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2425748 lncRNA downstream 66753 25329442 ~ 25330859 (-) True G2121549
TU2425625 lncRNA downstream 185125 25209088 ~ 25212487 (-) False G2121436
TU2425626 lncRNA downstream 185125 25209088 ~ 25212487 (-) True G2121436
TU2425629 lncRNA downstream 194295 25201914 ~ 25203317 (-) True G2121438
TU2425632 lncRNA downstream 239879 25156177 ~ 25157733 (-) True G2121441
TU2425799 lncRNA upstream 24280 25422128 ~ 25422360 (-) True G2121599
TU2425810 lncRNA upstream 44245 25442093 ~ 25442306 (-) True G2121610
TU2425841 lncRNA upstream 81703 25479551 ~ 25479841 (-) True G2121641
TU2425855 lncRNA upstream 99261 25497109 ~ 25497341 (-) True G2121655
TU2425930 lncRNA upstream 172502 25570350 ~ 25570554 (-) True G2121726
XM_036966783.1 mRNA downstream 32541 25344450 ~ 25365071 (-) False LOC110508789
XM_021589613.2 mRNA downstream 165082 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA downstream 165082 25215342 ~ 25232530 (-) True LOC110508788
XM_036966397.1 mRNA downstream 720460 24664869 ~ 24677152 (-) False LOC110508783
XM_021589598.2 mRNA downstream 720461 24664869 ~ 24677151 (-) False LOC110508783
XM_036966015.1 mRNA upstream 284470 25682318 ~ 26069267 (-) False LOC110508791
XM_036966012.1 mRNA upstream 284470 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA upstream 284470 25682318 ~ 26069268 (-) False LOC110508791
XM_036965987.1 mRNA upstream 732579 26130427 ~ 26266904 (-) True LOC110508193
XM_036966674.1 mRNA upstream 897926 26295774 ~ 26558418 (-) False LOC110508194
TU2425648 other downstream 122986 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 249092 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 662625 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 728046 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 2067997 23325001 ~ 23329615 (-) True LOC110508185
TU2426633 other upstream 469453 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 548885 25946733 ~ 25950453 (-) True G2122515
TU2429842 other upstream 3147093 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 3147093 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 3229207 28627055 ~ 28685735 (-) True G2125253

Expression Profile