RNA id: TU2425855



Basic Information


Item Value
RNA id TU2425855
length 233
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G2121655
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 25497109 ~ 25497341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAAAGTAGTTCTTAAACATCTATTCTAGgtaacgtcagctagctagctaccacacTACATATAAATAGGATAGACCAATTTTTTATGACACAAACGTCAACTTGATCAGTTAAAATCAACAATGTTAGCTACCCAGCTAGTAGCTAAGCTAGCTTGCTAATGAACAGACTTCCAGTCCTAAACAGAGAACTATGACAAAAACACAGTTGCAACAAAATATCAAATGTTATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2425841 lncRNA downstream 17268 25479551 ~ 25479841 (-) True G2121641
TU2425810 lncRNA downstream 54803 25442093 ~ 25442306 (-) True G2121610
TU2425799 lncRNA downstream 74749 25422128 ~ 25422360 (-) True G2121599
TU2425780 lncRNA downstream 99261 25397612 ~ 25397848 (-) True G2121580
TU2425748 lncRNA downstream 166250 25329442 ~ 25330859 (-) True G2121549
TU2425930 lncRNA upstream 73009 25570350 ~ 25570554 (-) True G2121726
TU2425934 lncRNA upstream 75043 25572384 ~ 25572717 (-) True G2121730
TU2425954 lncRNA upstream 86319 25583660 ~ 25583904 (-) True G2121750
TU2425964 lncRNA upstream 95097 25592438 ~ 25592790 (-) True G2121760
TU2426632 lncRNA upstream 179794 25677135 ~ 25683312 (-) False LOC110508791
XM_036966784.1 mRNA downstream 84777 25344450 ~ 25412332 (-) True LOC110508789
XM_036966783.1 mRNA downstream 132038 25344450 ~ 25365071 (-) False LOC110508789
XM_021589613.2 mRNA downstream 264579 25215342 ~ 25232530 (-) False LOC110508788
XM_036966572.1 mRNA downstream 264579 25215342 ~ 25232530 (-) True LOC110508788
XM_036966397.1 mRNA downstream 819957 24664869 ~ 24677152 (-) False LOC110508783
XM_036966015.1 mRNA upstream 184977 25682318 ~ 26069267 (-) False LOC110508791
XM_036966012.1 mRNA upstream 184977 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA upstream 184977 25682318 ~ 26069268 (-) False LOC110508791
XM_036965987.1 mRNA upstream 633086 26130427 ~ 26266904 (-) True LOC110508193
XM_036966674.1 mRNA upstream 798433 26295774 ~ 26558418 (-) False LOC110508194
TU2425648 other downstream 222483 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 348589 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 762122 24730674 ~ 24734987 (-) True G2120836
TU2424934 other downstream 827543 24664874 ~ 24669566 (-) False LOC110508783
TU2423555 other downstream 2167494 23325001 ~ 23329615 (-) True LOC110508185
TU2426633 other upstream 369960 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other upstream 449392 25946733 ~ 25950453 (-) True G2122515
TU2429842 other upstream 3047600 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 3047600 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 3129714 28627055 ~ 28685735 (-) True G2125253

Expression Profile