RNA id: TU2427086


Basic Information

Item Value
RNA id TU2427086
length 894
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2122765
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26391250 ~ 26392143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctattcaacccctttgttctggcaagcctaaataagttcaggagtaaacatttgcttaacaagtcacataaaaagttgcatggactcactctgtgtgcaataatagtgtttaacatgattttttaatgactacctcatctctgtaccccacacatacagttaactgtaaggtccctcatttgAGCAGTgcattttaaacacagattcaaacacaaagaccagggagggcaTCTagtggtagatgggtaaacattaaaaagcagacattgattatccctttgagcataattaagttattcattacactttggagggtgtatcaatacacccagtcactacaaagatacagacgtccttcctaactcagttgccggagaggaaggaaaccgctcaggaatttcaccatgaggccaatggtgactttaaaacatttacagagtttaatggttgtgataggtgaaaactgaggatggatcaacaacagtgtagttactccacaatactaacctatttgacagagtgaaaagaaggaagtctgtacagaatcaAAATATGTCAAAACACGCATccgtttgcaacaaggcactaaagtaatactgcaaaaacaaTGTGGCAATACAATTAcgtttttgtcctgaatacaaagtgttatgtttggggcaaattcaataaaacacattactgtAAGGACAGACACtaggagacgagaagcaagtacagggagtgaacatttaataaataacggacatgaaacagaacacggacagcgtctggacagggcaaacaaaacaacattaatgctgacacggggaactgtcacaccctgatctgtttcacctgtccttgtgcttgtctccacccccctccaggtgttgcccatctttaccattatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427085 lncRNA downstream 3551 26387418 ~ 26387699 (-) True G2122764
TU2427084 lncRNA downstream 3961 26387090 ~ 26387289 (-) True G2122763
TU2427083 lncRNA downstream 4306 26386742 ~ 26386944 (-) True G2122762
TU2427078 lncRNA downstream 14653 26376301 ~ 26376597 (-) True G2122757
TU2426977 lncRNA downstream 94642 26295901 ~ 26296608 (-) True LOC110508194
TU2427088 lncRNA upstream 3039 26395182 ~ 26395533 (-) True G2122767
TU2427095 lncRNA upstream 19617 26411760 ~ 26411967 (-) True G2122773
TU2427096 lncRNA upstream 21324 26413467 ~ 26414008 (-) True G2122774
TU2427099 lncRNA upstream 35955 26428098 ~ 26428356 (-) True G2122777
TU2427106 lncRNA upstream 44575 26436718 ~ 26437031 (-) True G2122784
XM_036965987.1 mRNA downstream 124346 26130427 ~ 26266904 (-) True LOC110508193
XM_036966012.1 mRNA downstream 321982 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA downstream 321982 25682318 ~ 26069268 (-) False LOC110508791
XM_036966015.1 mRNA downstream 321983 25682318 ~ 26069267 (-) False LOC110508791
XM_036966784.1 mRNA downstream 978918 25344450 ~ 25412332 (-) True LOC110508789
trnam-cau-2 mRNA upstream 168104 26560247 ~ 26560319 (-) True trnam-cau-2
trnag-ucc-234 mRNA upstream 168737 26560880 ~ 26560951 (-) True trnag-ucc-234
trnag-ucc-235 mRNA upstream 171449 26563592 ~ 26563663 (-) True trnag-ucc-235
trnag-ucc-236 mRNA upstream 173345 26565488 ~ 26565559 (-) True trnag-ucc-236
trnag-ucc-237 mRNA upstream 176057 26568200 ~ 26568271 (-) True trnag-ucc-237
TU2426633 other downstream 322041 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 440797 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1116624 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1242730 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1656263 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 2152798 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 2152798 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2234912 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2270565 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2299996 28692139 ~ 28692470 (-) True G2125290

Expression Profile