RNA id: TU2427096


Basic Information

Item Value
RNA id TU2427096
length 542
lncRNA type intronic
GC content 0.42
exon number 1
gene id G2122774
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26413467 ~ 26414008 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttgacattggggcttctcttctcttcattggttagacatttgaGCTTCtcatctcttcattggttagacattggggtttcgcttcattggttagacattggggcttctcttttcttcattggttagacattggggcttctcttttcttgattggttagacattggggattctgttttcttcattggttagacattggggcttctcttttcttcattggttagacattggggcttctcttttcttcattggttagacattggggcttctcttttcatcattggttagacattggggcttctcttctcttcattggttagacactgtggcttctcctctcttcattggttagtcaTTGGGGCATCCATTCTtttcattggttagacactggggcttctcttttcttaattggttagacattggggcttctcttctttgtttagacattggggcttctatTTTCTTCATTGGTTGGACGTTGGGGCTtatcttctcttcattggttagacactggggcttctcttctcttcattggttagaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427095 lncRNA downstream 1500 26411760 ~ 26411967 (-) True G2122773
TU2427088 lncRNA downstream 17934 26395182 ~ 26395533 (-) True G2122767
TU2427086 lncRNA downstream 21324 26391250 ~ 26392143 (-) True G2122765
TU2427085 lncRNA downstream 25768 26387418 ~ 26387699 (-) True G2122764
TU2427084 lncRNA downstream 26178 26387090 ~ 26387289 (-) True G2122763
TU2427099 lncRNA upstream 14090 26428098 ~ 26428356 (-) True G2122777
TU2427106 lncRNA upstream 22710 26436718 ~ 26437031 (-) True G2122784
TU2427110 lncRNA upstream 30599 26444607 ~ 26445150 (-) True G2122788
TU2427114 lncRNA upstream 34109 26448117 ~ 26448415 (-) True G2122792
TU2427116 lncRNA upstream 36500 26450508 ~ 26450770 (-) True G2122794
XM_036965987.1 mRNA downstream 146563 26130427 ~ 26266904 (-) True LOC110508193
XM_036966012.1 mRNA downstream 344199 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA downstream 344199 25682318 ~ 26069268 (-) False LOC110508791
XM_036966015.1 mRNA downstream 344200 25682318 ~ 26069267 (-) False LOC110508791
XM_036966784.1 mRNA downstream 1001135 25344450 ~ 25412332 (-) True LOC110508789
trnam-cau-2 mRNA upstream 146239 26560247 ~ 26560319 (-) True trnam-cau-2
trnag-ucc-234 mRNA upstream 146872 26560880 ~ 26560951 (-) True trnag-ucc-234
trnag-ucc-235 mRNA upstream 149584 26563592 ~ 26563663 (-) True trnag-ucc-235
trnag-ucc-236 mRNA upstream 151480 26565488 ~ 26565559 (-) True trnag-ucc-236
trnag-ucc-237 mRNA upstream 154192 26568200 ~ 26568271 (-) True trnag-ucc-237
TU2426633 other downstream 344258 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 463014 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1138841 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1264947 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1678480 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 2130933 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 2130933 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2213047 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2248700 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2278131 28692139 ~ 28692470 (-) True G2125290

Expression Profile