RNA id: TCONS_00058184


Basic Information

Item Value
RNA id TCONS_00058184
length 5339
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_028707
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 17875071 ~ 17882930 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTGTTTTGTGGGACAGCTTTATTCAAACCTCCAAAGCGAACGTGAGTAGATGTTTTGATTATTTTCTATTAATGGGTGTGTTAATTTTGACATGTCAGCAGTGTAGAAATTGTCATTGAGGTTTTCCTGTGCAAATAAGTTGACCAGAATAAGCAATATAACATGTGACCCTGGATGTGAAAAGCAGTCATACATAGAGGTTTCATTTTGTTAAAATCAAGAAATACGCACTCCATTGACATCTGTAATCTGACGGCTggaaaaaaaaaggctttaaagTTGTGCAGATGAAGTTGTTGGCAATGCTTATTACTCAGcgaattgttttgtttgtttattcgctGTAGGAGACGTGCGTCAAATGTCTTGACTGAACGTGATGTAGTGGCCAAAATACCAATGCAAGGAAAAGTGGTCCACACGAGAAGAAATAGGCATTAATCGGTTGCAAATGATTTGCTGTTTTGTAGTGTGATTTCCTTGATGACTTGATGGTGCAGGTGCTGCATAAAGAAGCGAAGTGTGCAAAAGTAAAGACGATGCTCCAGATGAAGCCTGACATTTGGCCGGATCTGTAATTGAGTAGCGCTGAAGCTGGCAATGAAGCGACCGGCCTTTATCACAATCTTGAACAGGACAAAGACAGCTGAGGGTGGCAGCCCGGAGCGTGGAGAGGCCTTTGATGATGGACTCGCGTGGGCAAGTGCAGAAGAGAGCAGGTGAATGGCGAACGCCTTGTCGCACAGCACGAGACGACGCTGTGGGAATGCAGTGTTAAAAATGGGCTTTCTGATGTCCACCGTCATGTAGAGTCATGATTAAGCCTAAATATGAGTAGATGAGGAGTGACGGTGTTGATGTTATGGGAGTTGTGATGGTGTACTTGTATGTGGGTGCCATCAACACCTGTGCAGTGGTAGAAACGGTGAGGGTGTAAAAAAAGGCCATATTGCAAGTACACGCGGAAATGAGGAAGAGTTGGGCCATTATGGCAATAAGAACATTAAGGCTATAAGGCATTAAGAGCAATAAGAAAAAATAGATTTGTAGATGTACTTTTACttgcatttcattgcagacaacacaGTGGCGCATCATTTATTGTGTTCATTgtggtttttgttgttgttgttgttgttgttgtagttttttGTAAATATGTAGTGCAATTTTGTTTCTGGCAACACATTTGacaaaaagttggaacagtaaagcatttactattttgtaatgttgccattcctcttcacaacacttaaaagacttttagggactgaagacagcaagtgGTGAATAGTTTGAGGTGTAATTTTGACCCATTGTTCCTGCAAACAGGTGTTAAGGTGAGCAGCAGTAAGGGCTGTTGATTGTGACATTTTGCAGTTGAAATTGtgcattctctattggagacggGTTGGGACTGtggcaggcaggccagtcaagtagcTGTATCCTGTTCCTTCGCAGGCAGGACTTTGTAaggtgtgcagaatgtggttttgcattgtcttgttgaaacatTGATAggcatccctggaaaagaaggcagcatattgtgctccaaaatgtGTATGTACTTGAATGTACTGCCCCTCAGAATAGGTGTAAAAGTGATTGATCTGTGAGCACAGCGCTTGTTTGttctgtgtgatggtccatcccagatgcttTAGAGTCCAGAGAAGTGGATGGAGCTTGTTGACAGTGATACGACCGGGCTTCCTACAGTACAGTATTGAGGAGCATTTGTGGATGTAAGTTTGTGTTGTGGTACTTGGCGAATGTTTGTGAAAGTAGTCCTGAGGCCATGTGGTGATgtggcttatagatgaatgaggatggTTGATGCAGTGGCACCTGAGGAAGAGATtgttctcatgtatttgttggcaaaatGGCGATCCTTGGGCCATCTTTGCTCCTTAAGGGCTAGACCTTCCTTGGATGCTGGTTTTGTAGCAGATCATACTTACAATCTCCTGTTTGAGATCACATCATTATTGAAGCAGCGTGCCTGATTAGTAGGCCTAAATTGCTTTAGgcgcaagttttttttttttaatttgtgtctgaatgacagaaacaggatgcgtatttacaaatgaaatgaagttgattGGACAGAGTCTGTAATGAAATAGAAGTGTGAAATGTTTGTGTTTTCCTAACTGTTTGTGATTTGGGGTTGTGGTATGTGAAGAATTAGTTGGAAATTGTTATGCTGTAATTGGAGTTATTGTAAGATTGATGAATGGAATGGACTCTTGGCAAAGGCCCCCCCTCCCCCCTTTTGAGAAGCTTTAACTATGGTACATGGTGCTCCCCTGTTAGTTTGTGCAGTTCCCAGTGAATAATTTTGTGTCCAGATGACACAGTGAGACAAAAGCGGACACAAAGGCTTGCGTTATGCGTCTGAGAGGAAGTATTGTAAGCATTAATGCGAGTATGAGATGAGTGTGAGGTGTGAGGATTGTTGTAAGTTGAAGAAGCCAGTCCAGGAGAGTTGTTCTAAGCACAATTGTTTATTGAGATGTGTCGACTGTTCTGCAGTCAAATAGCATCTTCACGAAGTCCACATGAATGGTCAAGAGCTTACGAGAGTTTGTTACAGTGACAAAAATATAGGTGAAAGAAGTGTAGTTATAGCAgagttgtgtttgttttattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaggagtGGGCAGAGTTTATAGTTGGAGGCAGCTAAAGAAGTGATATAGTGTAAATGCGGTAGGTACTGCAGGTGAAAGAATGTGTGCGCACACAAGTTTAGCAATAGAAGAGTTTGTTTGGCTTGAATGGATTCCACAAAGGCACAGTGGTTGAGACTCTGTCTGTAGTATTTGTATGGATGTGGGATGTGCCAGTGCTCAGGAAGTGAAAGGTTTCATGTGTGTCACTCCCTGGCTCGTGGAGTTTTGAGTAAAATTATATAATGGAAAAGCAAAGAATAGAAGTGTTTtgactgtatatttttgtatgtatgtatgtatgtatgtatgtatgtatgtttatatttatatttgtattgatttgtaaGTAGGGCATCTAAATGGGTTTTTCCACAGCATGAATGAAAAGAAAGGTTGAAGCTGTAGCCAGAGTTGATGCCTAATGATTGTGCTGAAAAATGTTGAATTTGGCCTGTTGTATGAGAGGATAAGAGATGTCGGGGTGTAGTGGAGGCAGTAAAGATGAATGGATTGTTTATGTGGGTGTGAAAGGTTCTGAGGCGTAATTTCGCTGATCTGAGCAGTGTTGTTGAGAGTAGTTGAGTGTAGTTGTTGTGAGTGTGACGTAACGTGACATCATCCAGAAAGTAAAGTTTGGTGGGCTGTCCCGGTCCCAAAACAGAAGAGATGATTTGAAGATGATTTGTCTGCAGATGTTTGTGTTGCAGAAGTGGCAGTGTTGTGTTGTGGTTTGTAAGTGATGAGATGTTTCTCCTCTGTTTAGCGTGAGGAGCAGGATGCTGTCCAAAAGGTTGTGAACATCCCCTGAAGCGACATACACCGCCACACTGAGAAGGATGTGACAGGAGAGAGCAACGGCACACTGACCTGTAGCTTTGGCATCCACTGTGCGCGCATGCTTTTGtcagtctctctctttctgttacACACTCACTCGCTGTATCTTGGCATGAAAGCATTTCCTGTCAGCTGCTCTCACCACTGGGGTGTATTTTATTGCTTGGTGGTGTGGTCAGGTGGAGCAGGGCCAGATTAGTGTGTGAGTTAGAGATGGTGGaagtgtctcacacacacacaagctgctTCTCCAGCACCAGtgataatgtaatgtgtaaatgTATTGATTTTCCAAGTGGACATGATGCGATTGCACAGATTTGTCAGTTGGATATCCATTTTGGCATGACAttaagtacagtattgccaaagcatttcaaatatgaaatatatgaaaACCCTAGAAAAATGAATAGTAATACAGATAAGATATaatgacacacaaaaaaacaaaacatttgataaatataataataataataataataataataataatagtaaagtgtaaataattgaaataagaTACACAAATTAACATTaaccatttctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacacacatatacatatatacatacatacatacatacatacatacatacaatgaAATAAAGAAATGTGAAGGGGGGTTGATGTGGTGAGTCAGTACATTGTGAAAGAGAAAAGTAGTAGGTTGAAATCATCACGTGCAAAAGGGCTCCAAAACATGGCATCAAAGGCGAGCTTGAGTGGTGTCAGCAAATGAGCGAAGATGATGTAACAATGGCTTGTCTGCAATGACTTGAGTAGGGCCTTATGTGTGTGTCAGGGCAGAACTCCTTCAATGTTTTTCCAGAGCagtgttgctgctgctgctgtgtagATGATGTACTTGTGATATGAATTGAGACAGTGGATGTGGCAGGGGTGTATGGTGAAATGCAGGCATTTGGTTTATGTAGCATGAATCATGGTTCAGATGTAACCCATGTAAACCGGAAGCAGTGAAGGCTTATTGGAAAGTGTTTAATGGCTGTTTGGTTAGTCTACAGGTGGCATGAAGGCAGCAACCCTGAAGCAGGATGGTGCAGCAGTGCTGTTGTGAGGGACAGTAGGTATGTCTtgaatgcatttatttgtatGCTTCTGTCATAATCAGTCAGTGTATGAACATGTAGTGATCGCAATTTGCTTTGAATTTCAGCTTGGTGCAGTCAAGCAGCTGTCAGGCCATCCAAGGTGGACATCTGAAGAGGTCATGTGGCATCAATGTGAGCAAAGCTTGTAAGTGCTAGTAGTGTATGTGTCCATATGTAGTATGATGGCATTGAACTAATCAGTTCAAGCGTTTGATGTAAGATGAGCCGTTTTATTTGAGGCATCATCATAGTTTCTTTATGTCTGAAAGCTTGTAATAGGCGTTGAGGGTATGGGTGagtcagttaatagaaatgatgTGATGCTCAAGTATAAGCAGATGTTAGTGTTGTTCATTGACTGTGTTGTGAGACCATGTTGTGAAATAAAGACAAGTACAAAGCATGTCCTGTTTGCTTTTATTGAGGttgaaaaagttaaatgaaaGAGTGACCGCAACTGTATTTTTGCTAAGTATTTATACTTAGTGCGAATTTTCCCCCTCTCTtccttgtttaataaatatatatatataagtcgtTACTCG

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0048468 cell development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006935 chemotaxis biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0014856 skeletal muscle cell proliferation biological_process
GO:0048513 animal organ development biological_process
GO:0050919 negative chemotaxis biological_process
GO:0014857 regulation of skeletal muscle cell proliferation biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0048519 negative regulation of biological process biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:1902679 negative regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051253 negative regulation of RNA metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048863 stem cell differentiation biological_process
GO:1903507 negative regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0030030 cell projection organization biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0060284 regulation of cell development biological_process
GO:0042330 taxis biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0031175 neuron projection development biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0048495 Roundabout binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058183 lncRNA downstream 300389 17571295 ~ 17574682 (-) False XLOC_028696
TCONS_00058182 lncRNA downstream 658848 17207127 ~ 17216223 (-) True XLOC_028690
TCONS_00055627 lncRNA downstream 658873 17181445 ~ 17216198 (-) False XLOC_028690
TCONS_00057347 lncRNA downstream 658898 17113379 ~ 17216173 (-) False XLOC_028690
TCONS_00055681 lncRNA upstream 723438 18605935 ~ 18606567 (-) True XLOC_028717
TCONS_00057349 lncRNA upstream 772185 18654682 ~ 18679692 (-) True XLOC_028721
TCONS_00058188 lncRNA upstream 830266 18712763 ~ 18714926 (-) True XLOC_028722
TCONS_00058189 lncRNA upstream 1069985 18952482 ~ 18954075 (-) False XLOC_028727
TCONS_00058190 lncRNA upstream 1069985 18952482 ~ 18964897 (-) False XLOC_028727
TCONS_00055654 mRNA downstream 36892 17836098 ~ 17838179 (-) True XLOC_028706
TCONS_00055652 mRNA downstream 51647 17821390 ~ 17823424 (-) False XLOC_028705
TCONS_00055653 mRNA downstream 52624 17821736 ~ 17822447 (-) True XLOC_028705
TCONS_00055651 mRNA downstream 62940 17807837 ~ 17812131 (-) True XLOC_028704
TCONS_00055649 mRNA downstream 69943 17801328 ~ 17805128 (-) False XLOC_028703
TCONS_00055655 mRNA upstream 4341 17886838 ~ 18201622 (-) False XLOC_028708
TCONS_00055656 mRNA upstream 5662 17888159 ~ 18202291 (-) False XLOC_028708
TCONS_00055662 mRNA upstream 325158 18207655 ~ 18281160 (-) False XLOC_028710
TCONS_00055661 mRNA upstream 325158 18207655 ~ 18281160 (-) False XLOC_028710
TCONS_00055663 mRNA upstream 326541 18209038 ~ 18281070 (-) True XLOC_028710
TCONS_00055646 other downstream 134286 17727386 ~ 17740785 (-) False XLOC_028701
TCONS_00055647 other downstream 137259 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055632 other downstream 614112 17257360 ~ 17260959 (-) False XLOC_028692
TCONS_00055587 other downstream 1661531 16213424 ~ 16213540 (-) True XLOC_028672
TCONS_00055582 other downstream 1866904 16003900 ~ 16008167 (-) False XLOC_028666
TCONS_00055657 other upstream 33435 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055658 other upstream 117020 17999517 ~ 18038547 (-) False XLOC_028708
TCONS_00055659 other upstream 153000 18035497 ~ 18089006 (-) True XLOC_028708
TCONS_00055660 other upstream 306909 18189406 ~ 18189520 (-) True XLOC_028709
TCONS_00055674 other upstream 711333 18593830 ~ 18595140 (-) True XLOC_028716

Expression Profile

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