RNA id: TU2427119



Basic Information


Item Value
RNA id TU2427119
length 405
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2122797
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26454687 ~ 26455091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTGttaagtctaccccctcctttttcgaacattctgttaaaaatcgcgcaacatttcagcgtcctgctactcatgccaggaatatagtatatgcatatgattagtatgtgtggatagaaaacactctgaagtttctaaaactggttaaatcacggctgtgactataacagagcgtgtgtttcatcgaaaagcgcaagaaaaactggtcactgaaaactgaaaaaaatatccatgcgccacttgcatgtattgtttaaggggcaccaaattaaatagggcggagattgcaattcctacagcttccacacgatgtagccaaaaacgtaattttcattgacaaaaatcctttgtgtcatgacaaatagatccttcattccatccagcctacagcaatcgattttgga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2427116 lncRNA downstream 3917 26450508 ~ 26450770 (-) True G2122794
TU2427114 lncRNA downstream 6272 26448117 ~ 26448415 (-) True G2122792
TU2427110 lncRNA downstream 9537 26444607 ~ 26445150 (-) True G2122788
TU2427106 lncRNA downstream 17656 26436718 ~ 26437031 (-) True G2122784
TU2427099 lncRNA downstream 26331 26428098 ~ 26428356 (-) True G2122777
TU2427125 lncRNA upstream 8252 26463343 ~ 26464146 (-) True G2122803
TU2427136 lncRNA upstream 25574 26480665 ~ 26481199 (-) True G2122813
TU2427139 lncRNA upstream 30804 26485895 ~ 26486134 (-) True G2122816
TU2427146 lncRNA upstream 54406 26509497 ~ 26509755 (-) True G2122823
TU2427147 lncRNA upstream 56638 26511729 ~ 26511977 (-) True G2122824
XM_036965987.1 mRNA downstream 187783 26130427 ~ 26266904 (-) True LOC110508193
XM_036966012.1 mRNA downstream 385419 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA downstream 385419 25682318 ~ 26069268 (-) False LOC110508791
XM_036966015.1 mRNA downstream 385420 25682318 ~ 26069267 (-) False LOC110508791
XM_036966784.1 mRNA downstream 1042355 25344450 ~ 25412332 (-) True LOC110508789
trnam-cau-2 mRNA upstream 105156 26560247 ~ 26560319 (-) True trnam-cau-2
trnag-ucc-234 mRNA upstream 105789 26560880 ~ 26560951 (-) True trnag-ucc-234
trnag-ucc-235 mRNA upstream 108501 26563592 ~ 26563663 (-) True trnag-ucc-235
trnag-ucc-236 mRNA upstream 110397 26565488 ~ 26565559 (-) True trnag-ucc-236
trnag-ucc-237 mRNA upstream 113109 26568200 ~ 26568271 (-) True trnag-ucc-237
TU2426633 other downstream 385478 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 504234 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1180061 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1306167 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1719700 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 2089850 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 2089850 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2171964 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2207617 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2237048 28692139 ~ 28692470 (-) True G2125290

Expression Profile