RNA id: TU2427157



Basic Information


Item Value
RNA id TU2427157
length 210
lncRNA type intronic
GC content 0.49
exon number 1
gene id G2122834
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 26538250 ~ 26538459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaacagttcaaactggaacagcagcatgaccaggtggtcatcaggccaggtagtcctgaggcatggtcctagggctcaggtcctctgagagagagagagagagagaaaaagagagagaattagagggagcatacttaaattcacacaggacaccggataagacaggataattactccagatataacagactgaccctagccccccgaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2427147 lncRNA downstream 26273 26511729 ~ 26511977 (-) True G2122824
TU2427146 lncRNA downstream 28495 26509497 ~ 26509755 (-) True G2122823
TU2427139 lncRNA downstream 52116 26485895 ~ 26486134 (-) True G2122816
TU2427136 lncRNA downstream 57051 26480665 ~ 26481199 (-) True G2122813
TU2427125 lncRNA downstream 74104 26463343 ~ 26464146 (-) True G2122803
TU2427159 lncRNA upstream 3827 26542286 ~ 26542945 (-) True G2122836
TU2427164 lncRNA upstream 14881 26553340 ~ 26553557 (-) True G2122841
TU2427171 lncRNA upstream 75336 26613795 ~ 26614108 (-) True G2122847
TU2427182 lncRNA upstream 85756 26624215 ~ 26624435 (-) True G2122858
TU2427344 lncRNA upstream 147266 26685725 ~ 26688170 (-) True G2122986
XM_036965987.1 mRNA downstream 271346 26130427 ~ 26266904 (-) True LOC110508193
XM_036966012.1 mRNA downstream 468982 25682318 ~ 26069268 (-) False LOC110508791
XM_036966014.1 mRNA downstream 468982 25682318 ~ 26069268 (-) False LOC110508791
XM_036966015.1 mRNA downstream 468983 25682318 ~ 26069267 (-) False LOC110508791
XM_036966784.1 mRNA downstream 1125918 25344450 ~ 25412332 (-) True LOC110508789
trnam-cau-2 mRNA upstream 21788 26560247 ~ 26560319 (-) True trnam-cau-2
trnag-ucc-234 mRNA upstream 22421 26560880 ~ 26560951 (-) True trnag-ucc-234
trnag-ucc-235 mRNA upstream 25133 26563592 ~ 26563663 (-) True trnag-ucc-235
trnag-ucc-236 mRNA upstream 27029 26565488 ~ 26565559 (-) True trnag-ucc-236
trnag-ucc-237 mRNA upstream 29741 26568200 ~ 26568271 (-) True trnag-ucc-237
TU2426633 other downstream 469041 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 587797 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 1263624 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 1389730 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 1803263 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 2006482 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 2006482 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 2088596 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 2124249 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 2153680 28692139 ~ 28692470 (-) True G2125290

Expression Profile