RNA id: TU2428678


Basic Information

Item Value
RNA id TU2428678
length 301
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2124168
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27299520 ~ 27299820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctaaaattttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatcttttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcattt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2427976 lncRNA downstream 11431 27287770 ~ 27288089 (-) True G2123531
TU2427964 lncRNA downstream 18999 27280152 ~ 27280521 (-) True G2123519
TU2427954 lncRNA downstream 23127 27275779 ~ 27276393 (-) True G2123510
TU2427949 lncRNA downstream 25328 27273952 ~ 27274192 (-) True G2123505
TU2427939 lncRNA downstream 33825 27265495 ~ 27265695 (-) True G2123495
TU2428679 lncRNA upstream 461 27300281 ~ 27300509 (-) True G2124169
TU2428702 lncRNA upstream 43956 27343776 ~ 27345757 (-) True G2124191
TU2428746 lncRNA upstream 93774 27393594 ~ 27394370 (-) False G2124230
TU2428747 lncRNA upstream 93774 27393594 ~ 27394370 (-) False G2124230
TU2428749 lncRNA upstream 93774 27393594 ~ 27394370 (-) False G2124230
XM_036966420.1 mRNA downstream 56214 27141544 ~ 27243306 (-) False tox
XM_021589643.2 mRNA downstream 243704 27051258 ~ 27055816 (-) True ppp1r7
XM_021589644.2 mRNA downstream 243709 27051258 ~ 27055811 (-) False ppp1r7
XM_021589641.2 mRNA downstream 253039 27033696 ~ 27046481 (-) True LOC110508807
XM_021589642.2 mRNA downstream 253167 27033696 ~ 27046353 (-) False LOC110508807
XM_021589654.2 mRNA upstream 3925 27303745 ~ 27316746 (-) False LOC110508819
XM_021589653.2 mRNA upstream 3925 27303745 ~ 27316749 (-) True LOC110508819
XM_021589657.2 mRNA upstream 177203 27477023 ~ 27494193 (-) False LOC110508822
XM_021589661.2 mRNA upstream 177203 27477023 ~ 27494193 (-) False LOC110508822
XM_036966000.1 mRNA upstream 177203 27477023 ~ 27494193 (-) False LOC110508822
TU2426633 other downstream 1230311 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1349067 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2024894 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2151000 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2564533 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1245121 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1245121 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1327235 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1362888 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1392319 28692139 ~ 28692470 (-) True G2125290

Expression Profile