RNA id: TU2428763


Basic Information

Item Value
RNA id TU2428763
length 545
lncRNA type intronic
GC content 0.52
exon number 2
gene id G2124236
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27406992 ~ 27410682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacctacctcacacaccctcacacacacacctacctcacacacacacctacacacagctacctctctctcacacacacacacagctacctctcacacacacacacagctacctctcacacacctacctcacacacacacacacctacctcacacacacctacctcacacacacctacctcacacacacacacacacacacacacacctacctcacacacacacacctacctcacacacacacacacacctacctcagacacacacacacctacctcacacacacacacacctacctcacacacacacctacctcacacacacacctacctcacacacacacctacctcacacacacacacacacacacacaccaacctactcacacacacacctacctacctacctcacacacacacacctaccacacacacacaccacacacacctacctcacacacacacacctacctcacacacacaccaacctactcacacacacacacctacctacctacctcacacacacctacctacctcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428759 lncRNA downstream 3870 27402280 ~ 27403122 (-) True G2124233
TU2428753 lncRNA downstream 12622 27393594 ~ 27394370 (-) False G2124230
TU2428786 lncRNA upstream 28218 27436669 ~ 27437199 (-) True G2124257
TU2428795 lncRNA upstream 51041 27459492 ~ 27459757 (-) True G2124266
TU2428797 lncRNA upstream 51950 27460401 ~ 27460663 (-) True G2124268
TU2428807 lncRNA upstream 63070 27471521 ~ 27471753 (-) True G2124278
TU2428823 lncRNA upstream 100622 27509073 ~ 27509351 (-) True G2124290
XM_021589653.2 mRNA downstream 90243 27303745 ~ 27316749 (-) True LOC110508819
XM_021589654.2 mRNA downstream 90246 27303745 ~ 27316746 (-) False LOC110508819
XM_036966420.1 mRNA downstream 163686 27141544 ~ 27243306 (-) False tox
XM_021589643.2 mRNA downstream 351176 27051258 ~ 27055816 (-) True ppp1r7
XM_021589644.2 mRNA downstream 351181 27051258 ~ 27055811 (-) False ppp1r7
XM_021589657.2 mRNA upstream 68572 27477023 ~ 27494193 (-) False LOC110508822
XM_021589661.2 mRNA upstream 68572 27477023 ~ 27494193 (-) False LOC110508822
XM_036966000.1 mRNA upstream 68572 27477023 ~ 27494193 (-) False LOC110508822
XM_036966001.1 mRNA upstream 68572 27477023 ~ 27494193 (-) False LOC110508822
XM_036966004.1 mRNA upstream 68572 27477023 ~ 27494193 (-) False LOC110508822
TU2426633 other downstream 1337783 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1456539 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2132366 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2258472 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2672005 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1136490 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1136490 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1218604 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1254257 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1283688 28692139 ~ 28692470 (-) True G2125290

Expression Profile