RNA id: TU2428797


Basic Information

Item Value
RNA id TU2428797
length 263
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G2124268
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27460401 ~ 27460663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgtatttggggagtttctcccattcttctctgcagattcgctcaagctctgtcaggttggatggggagtgtctctgcacagctatttccaggtctctcaagagatcgggttcaagtccaggctctggctgggccactcaaggatattcagagacttgtcccaaagccactcctgcattgtcttggctgtatgcttagggtcattgtcctgttgggaggtgaaccttggccccagtctgaggtcccgagaGCAGGtgttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428795 lncRNA downstream 644 27459492 ~ 27459757 (-) True G2124266
TU2428786 lncRNA downstream 23202 27436669 ~ 27437199 (-) True G2124257
TU2428762 lncRNA downstream 49719 27406992 ~ 27410682 (-) False G2124236
TU2428763 lncRNA downstream 51950 27406992 ~ 27408451 (-) True G2124236
TU2428759 lncRNA downstream 57279 27402280 ~ 27403122 (-) True G2124233
TU2428807 lncRNA upstream 10858 27471521 ~ 27471753 (-) True G2124278
TU2428823 lncRNA upstream 48410 27509073 ~ 27509351 (-) True G2124290
TU2428854 lncRNA upstream 104418 27565081 ~ 27565425 (-) True G2124319
TU2428857 lncRNA upstream 107952 27568615 ~ 27568884 (-) True G2124322
TU2428859 lncRNA upstream 108736 27569399 ~ 27569602 (-) True G2124324
XM_021589653.2 mRNA downstream 143652 27303745 ~ 27316749 (-) True LOC110508819
XM_021589654.2 mRNA downstream 143655 27303745 ~ 27316746 (-) False LOC110508819
XM_036966420.1 mRNA downstream 217095 27141544 ~ 27243306 (-) False tox
XM_021589643.2 mRNA downstream 404585 27051258 ~ 27055816 (-) True ppp1r7
XM_021589644.2 mRNA downstream 404590 27051258 ~ 27055811 (-) False ppp1r7
XM_021589657.2 mRNA upstream 16360 27477023 ~ 27494193 (-) False LOC110508822
XM_021589661.2 mRNA upstream 16360 27477023 ~ 27494193 (-) False LOC110508822
XM_036966000.1 mRNA upstream 16360 27477023 ~ 27494193 (-) False LOC110508822
XM_036966001.1 mRNA upstream 16360 27477023 ~ 27494193 (-) False LOC110508822
XM_036966004.1 mRNA upstream 16360 27477023 ~ 27494193 (-) False LOC110508822
TU2426633 other downstream 1391192 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1509948 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2185775 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2311881 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2725414 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 1084278 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 1084278 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1166392 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1202045 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1231476 28692139 ~ 28692470 (-) True G2125290

Expression Profile