RNA id: TU2428859


Basic Information

Item Value
RNA id TU2428859
length 204
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2124324
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27569399 ~ 27569602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaagatgccttattgacataagtattcagaccctttgctatgaaacctttggttcagaccctttgctatgagactcgaaattgagcttaggtgcatcctgtttccattgatcatccttgagatgtttctacaacttgattggagtccacctatggtaaattaaattgattggacattatttggaaagtcacacacctgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428857 lncRNA downstream 515 27568615 ~ 27568884 (-) True G2124322
TU2428854 lncRNA downstream 3974 27565081 ~ 27565425 (-) True G2124319
TU2428823 lncRNA downstream 60048 27509073 ~ 27509351 (-) True G2124290
TU2428807 lncRNA downstream 97646 27471521 ~ 27471753 (-) True G2124278
TU2428797 lncRNA downstream 108736 27460401 ~ 27460663 (-) True G2124268
TU2428861 lncRNA upstream 47 27569649 ~ 27570317 (-) False G2124325
TU2428860 lncRNA upstream 250 27569852 ~ 27570317 (-) False G2124325
TU2428862 lncRNA upstream 250 27569852 ~ 27570575 (-) True G2124325
TU2428872 lncRNA upstream 17096 27586698 ~ 27586921 (-) True G2124335
TU2428889 lncRNA upstream 47756 27617358 ~ 27645255 (-) True G2124352
XM_036966011.1 mRNA downstream 7839 27518375 ~ 27561560 (-) True LOC110508198
XM_021589663.2 mRNA downstream 52032 27512201 ~ 27517367 (-) True LOC110508824
XM_021589662.2 mRNA downstream 67763 27477023 ~ 27501636 (-) False LOC110508822
XM_021589665.2 mRNA upstream 22169 27591771 ~ 27595809 (-) True LOC110508825
XM_021589674.2 mRNA upstream 263758 27833360 ~ 27837602 (-) True LOC110508831
XM_036966316.1 mRNA upstream 339612 27909214 ~ 27922229 (-) False LOC110508834
XM_021589680.2 mRNA upstream 339612 27909214 ~ 27924372 (-) False LOC110508834
XM_021589678.2 mRNA upstream 339612 27909214 ~ 27924379 (-) False LOC110508834
TU2426633 other downstream 1500190 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1618946 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2294773 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2420879 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2834412 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 975339 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 975339 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1057453 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1093106 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1122537 28692139 ~ 28692470 (-) True G2125290

Expression Profile