RNA id: TU2428860


Basic Information

Item Value
RNA id TU2428860
length 466
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2124325
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27569649 ~ 27570575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCGAGCCCATACAGCACCAAATGGACGTGGATAATCCATTATTTTGCGcgatgttgttttgttgttgctgtatTTAATAGCATTGCATCTGTAGCCAAATTAATGTCGTTTGGTTCATCATAATAAATATAATTGCCCATGTAGATTTCACTCTGGTTCGTTGTCGTTGCAGAGGGACGTACGATTTGTGATTTCACGCCAAAGTTATTTGGTGTGGCACAGAGGAGCTGTCCACGACGCGTGGTGCTGAACTTGACCAGCAGCGGAATGAGCGGCCATAGTGTCGTCATCATGGTGTTAGCAAGTCTCCCTTTGGCTGCGTAGAGCGACTCTGGGTGGATGTTTacatcaaaacaaaacaaactcaACTCTTTTGTAATTGAAAGGCAAGAGTAATCTCAAATGCTGTCCTGGTGTGTTAGGCCCACTGTTTTTTGAGAATCACAGTTGTTTAACCTCATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428859 lncRNA downstream 250 27569399 ~ 27569602 (-) True G2124324
TU2428857 lncRNA downstream 968 27568615 ~ 27568884 (-) True G2124322
TU2428854 lncRNA downstream 4427 27565081 ~ 27565425 (-) True G2124319
TU2428823 lncRNA downstream 60501 27509073 ~ 27509351 (-) True G2124290
TU2428807 lncRNA downstream 98099 27471521 ~ 27471753 (-) True G2124278
TU2428872 lncRNA upstream 16381 27586698 ~ 27586921 (-) True G2124335
TU2428889 lncRNA upstream 47041 27617358 ~ 27645255 (-) True G2124352
TU2428956 lncRNA upstream 170316 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA upstream 170316 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA upstream 170316 27740633 ~ 27745009 (-) True G2124408
XM_036966011.1 mRNA downstream 8292 27518375 ~ 27561560 (-) True LOC110508198
XM_021589663.2 mRNA downstream 52485 27512201 ~ 27517367 (-) True LOC110508824
XM_021589662.2 mRNA downstream 68216 27477023 ~ 27501636 (-) False LOC110508822
XM_021589665.2 mRNA upstream 21454 27591771 ~ 27595809 (-) True LOC110508825
XM_021589674.2 mRNA upstream 263043 27833360 ~ 27837602 (-) True LOC110508831
XM_036966316.1 mRNA upstream 338897 27909214 ~ 27922229 (-) False LOC110508834
XM_021589680.2 mRNA upstream 338897 27909214 ~ 27924372 (-) False LOC110508834
XM_021589678.2 mRNA upstream 338897 27909214 ~ 27924379 (-) False LOC110508834
TU2426633 other downstream 1500643 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1619399 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2295226 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2421332 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2834865 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 974624 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 974624 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 1056738 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1092391 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1121822 28692139 ~ 28692470 (-) True G2125290

Expression Profile