RNA id: TU2428889



Basic Information


Item Value
RNA id TU2428889
length 228
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id G2124352
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27617358 ~ 27645255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgatgacagctttgcacactcttggcaaagggtggctactttgaagaatctcaaatatattttgatttgtttaacacttttttggttactacatgattccatgtgtGTTATTTCCCAGTTTTGatgtagaatgtagaaaatagtaaacatgtagaaaaacccttgaatgagaaggtgttcaaaacttttgaccagcaataaaaaacagaaatatcacatttacatatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2428872 lncRNA downstream 30437 27586698 ~ 27586921 (-) True G2124335
TU2428862 lncRNA downstream 46783 27569852 ~ 27570575 (-) True G2124325
TU2428861 lncRNA downstream 47041 27569649 ~ 27570317 (-) False G2124325
TU2428860 lncRNA downstream 47041 27569852 ~ 27570317 (-) False G2124325
TU2428859 lncRNA downstream 47756 27569399 ~ 27569602 (-) True G2124324
TU2428956 lncRNA upstream 95378 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA upstream 95378 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA upstream 95378 27740633 ~ 27745009 (-) True G2124408
TU2429093 lncRNA upstream 295862 27941117 ~ 27941947 (-) True G2124521
TU2429089 lncRNA upstream 298120 27943375 ~ 27944688 (-) True G2124520
XM_021589665.2 mRNA downstream 21549 27591771 ~ 27595809 (-) True LOC110508825
XM_036966011.1 mRNA downstream 55798 27518375 ~ 27561560 (-) True LOC110508198
XM_021589663.2 mRNA downstream 99991 27512201 ~ 27517367 (-) True LOC110508824
XM_021589662.2 mRNA downstream 115722 27477023 ~ 27501636 (-) False LOC110508822
XM_021589674.2 mRNA upstream 188105 27833360 ~ 27837602 (-) True LOC110508831
XM_036966316.1 mRNA upstream 263959 27909214 ~ 27922229 (-) False LOC110508834
XM_021589680.2 mRNA upstream 263959 27909214 ~ 27924372 (-) False LOC110508834
XM_021589678.2 mRNA upstream 263959 27909214 ~ 27924379 (-) False LOC110508834
XM_036966317.1 mRNA upstream 263959 27909214 ~ 27924379 (-) False LOC110508834
TU2426633 other downstream 1548149 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1666905 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2342732 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2468838 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 2882371 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 899686 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 899686 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 981800 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 1017453 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 1046884 28692139 ~ 28692470 (-) True G2125290

Expression Profile