RNA id: TU2428959


Basic Information

Item Value
RNA id TU2428959
length 4139
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G2124408
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27740633 ~ 27745009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCATATCATTTGGCTTTCAACACAAACACGTTTAAAAATGGATCATGTTCAGATACCAACAGTTACACACAACATGATACTAAAAGAGCGATAATTAATATGTAACATGACATGGTTGAAATAAAATGATTAGCTCATATTGTCAACTCTTCAGTGTCAACAGAAAACATCTTCCTTTAACCAATAAACAGCTCAGTTGTTCAAATGTAAAGGGTAGGTCCAGAGGACAAATACTGTATATGCAAACTGATAATTTTCCAACAAAACAGAACATTATTTATCCTATTCTTCCGATCCAATGCCTAGCACCTCTGTACAGAGCCACTGAATGCATGTGCATTATTACTTCATTGATTATCCTAATGGCAGTAGAGTAAACCGTCATCTGGCTACTGTAGACTTAGAGAACTTCACAAAACTAGTCCAGTACACACAGGTAATTATCCTTCACATCCTTCACATGACAGTTTTCTGAGCTTCTCTACTAGGCCTTTTCTAATGTGTATTGTGCATGTGTGCGCATGAGGTAATCTAAAcgctaatgacaacattgcagTATACTGTACCTCCATACTACTCTGTGAAGTTGACTTCAATTCAACATCTGTGGTTCTGGTTATCACTGTGGGTGAAACTGGTTCGACCTCAAAACAATGGACCTTTTAAAACAAATTAACATAAAAAACCAAGTGCGTcaataataataaaaaccttCAATTTTCCTTTAGGCCAAAAAGAGGACGTATTCCACTGAACGGTACAAGAGTGAAATAGCTACCAAATGTAGCAATACTTACGTGTCAGTGTAGTGAACTAACACCATATGGTTTATACTACAAAACACAATGTTACATCAACTTTCTTTTTTTAAGGTAATACATTAATTATTTGATTACCAATACAGCCTACACATATAATTTGTCTGCAGAGTTAAACTAGTAAGTAGGCTTTTCTTCACACACTAAAATTAATTATAAACAAGAACATGTTATAAAACAAGTAAAAAGAGAAAATACAGAAACATAACAGGCACTATTAATCTCCTTTGAGGCACTAATATTACAGAGTATGTTGTCTCTTTTTCCTCTTCGCTACTCCACCTTCTTGACGCGTCCTTTGAAAGCATCCATAAAGTTGAAAGCTCCCAGATACATCCCCAGCAGAATCCCAAGCTTGACGGGTATAATACTGGTGATAAAAACAGTCAATTAGGCTACATATTATCAATGATCACTGCAATGCGCAATTTATAGCTTATTAGGAGAACAAACATCATCTAGAAGAGAAAGTGAGTCCAAATTACTTCATTGGAACTTCATTAGAACCAAGTACATTAAGTCATCTATTCTGTTAGCCAGCCTAACTAACAGAATAGATCACTAGCCTAACTGGTAATCACAGTGGGACTAAATTAAACCCCTTAAAGAAGAAAACACTGATGAAAATCCAATGAATTATTCAGGATATAATCGACGCTGTTTGAATGTCTTCCAGTCCAGTAACAAAACGTATTTCAAAGGGCATAATAACCTCATAATTGCACTACTTATCATGTTAAGAGAAGCCATTTCATGCTTTAGTCATTTTGTCTAATTGGTGGCGAGTGATTGCGTCTACTGTATTCGTCAtggctgtattgtattgtattcgtCATggctgtattgtgttgtattcgtCATggctgtattgtgttgtattgtattcgTCATggctgtattgtgttgtattcgtCATggctgtattgtgttgtattcgtCATggctgtattgtgttgtattcgtCATggctgtattgtgttgtattcgtCATGGCTGTATTGTGTTGTAGTCGACATGAAGCCAACGACTCACTCTTTCATTCAGACTCATTCTCAAAGGCCTCAAGGAACTAATGTAGCCATGGAAATCATTCCAAATCAAAACTTCCCCACCAGACACACTCAGCTTGTTCAAACTTCTAAAAGCCCTCTTTCTCAAGGACATTTCCATAACGCAAAAAGCCTTGTGTAGATTTAAAATCTTGAGGTTGCAGATCATTTGTCAACTGCCGTCCTAATCAGGTGTAGGTCTGAATAAATCTGTTGTATCCAGCTAAATGTAGTCTTGCAGTCCACTCAACCAGGTGCTTCTATAACTGCTCATTGGCATCCGTACTTGACATAAATGCATAAGTAAGTGTTTAGCAACAGCCCAAAGGCTGGCAGATGGCGATCGAGTCATTTCCATCTTACCTTCCAAACGCATTGTATGAAGCCGGTAATAGACTTGTATTCTCCTGGACTGGTTCGTAGCTAAAACATTATCCAGTCAGGCTGCAAAGGCATCGATTTCCTCCTTAACTAAATTTAATGGCAGGAAGGCCGGAATATATGCATACTTTCTTTATGAAAACACCCTTTTCCACCACCAAGCTAAAGTGGCTAATGCCTAGGAATGCTAGTCTCGGGTGTTACGTATCGCGTTCAGCCAATCAGGTTGCGGCAGTGTGGTTTACCCCTGACTGAAATCAGGGTGCAACAGGAAGTAGCATTAGCCACTAGCCTGGTGGAGGAAAATGGTGTTTCAAAGAGCGTACTCATATCTTCTCAGTTTATTTCCTCCTTCTCGCAATTAAAATGTAGGAAATCAACACCTTTGCAGCCAGAATAGAAAATGTTTTCGGTATGGACCGGGTGTATTGCCAGCTGCATACAATGCGTTTGGACCGTAAGATGGAACCATCAATTCCAGATCAATAGCGCCATCTGCCGGCCTTTGGATAGATTGGTAAGCATTTACCGGTACCTGCCAGCCTTACGGATATACAAaggcagcctaattctgatctttttttcccCACTAATTGGTAATTTGGCCAACACCTCAGAACTTTTCACAtaagatatttttcagagctgatcggATTGGGCAAAAAGACCAATTAGTtttaaaaaaagatcagaattcaGCTTACTGTTGAAATACAGCCAAAGACAAGGTGTTGTGATGTCACGTTGGCAGAGGAGGGACAATGATGACCTTTTgatagccttcaaaataaattgaaaatgtgattttttaaaaatatgaTCGATGCAATATGCTCTGGGGTGTACCCAAGTGGCCCTGCCATTACAACAAACAGTTTCCCCATTTCTAGGGGCATGTTCAGGAGGGTATAACATTACAAAAAGTTCTAAAAGAAATGTATGGTGTAGATAAGAAaatgattgagaatcataccagCTGTGTATCAGGTTGTTTCCCTTCATTAAATACACCCCTGTAACGACTGTATTAGCGCTGACTAGGTTTGCACTGGGTATGAGTGAGGGTTGGCTGAATGATTGTAGAGCCTTGACTAACATGACTTCATCTTGTCTTACAAAAACACAacatttttttattataattCTTGAAGTAGTCACATCCCAATGGGATTTACAGTTATGGCCATATAAAACATTGAAAATACACCCAACCACAAAAGTGCATTTCTACATACTGTAACAGGTATTTCACTGATGCACAATGCCTCTTTAACAACGGCATTAGGCCCAAGTGAAACATTCAAACAGCTTTGACAGATTTCCGTAATTCAGTAGTCAAAAACAAACTCCCGCACTCTCACTAGTTCCCTAAAATATGTATCTGTATGCAAATTCATCAATGCACATGAACAATCCTTCTACAGGGCTTTGGGTGAGGTCTGTTTCACAAATAAAGTGACAGAATGTACCTTCAGTACTAGTGATAATGCAGTAACACTATGCAGATTCAATTTTCACCAGAGGTATCAGGGAATTCAATGCTGACCATTTACCTCAAGCTGTTGGATAATGTAAATGTTATGCTAACAGAAATCACCTCGGAGCCCTCTCTTAACAGTGTGAACTGTAGACATAACCGTTAAATCTACATGTTGCTATTGGCAGCCAGTGACGCTGATGCACGAATGGCTTCGTATGTTACAGAAAACACAATTCACACCCTGAGGGTGTGTGAGTTTGTTGACCATAGGCATGGGTTAAACGAGGGTCAGAGTGCAAGGGGCTGAAGTGAAGATCAGTGCAGCTTAAGGCTTGTTGTCTCACAGTGCTCTGGGTTCTCGAAGGCACCCAGGTACTTCCCCAGGAGAGCTGCCTGCTTCCACCTCAAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428889 lncRNA downstream 95378 27617358 ~ 27645255 (-) True G2124352
TU2428872 lncRNA downstream 153712 27586698 ~ 27586921 (-) True G2124335
TU2428862 lncRNA downstream 170058 27569852 ~ 27570575 (-) True G2124325
TU2428861 lncRNA downstream 170316 27569649 ~ 27570317 (-) False G2124325
TU2429093 lncRNA upstream 196108 27941117 ~ 27941947 (-) True G2124521
TU2429089 lncRNA upstream 198366 27943375 ~ 27944688 (-) True G2124520
TU2429145 lncRNA upstream 249390 27994399 ~ 27994967 (-) True G2124562
TU2429151 lncRNA upstream 252268 27997277 ~ 27998017 (-) True G2124567
TU2429210 lncRNA upstream 340107 28085116 ~ 28086921 (-) True G2124618
XM_021589665.2 mRNA downstream 144824 27591771 ~ 27595809 (-) True LOC110508825
XM_036966011.1 mRNA downstream 179073 27518375 ~ 27561560 (-) True LOC110508198
XM_021589663.2 mRNA downstream 223266 27512201 ~ 27517367 (-) True LOC110508824
XM_036966002.1 mRNA downstream 238997 27477023 ~ 27501636 (-) False LOC110508822
XM_021589674.2 mRNA upstream 88351 27833360 ~ 27837602 (-) True LOC110508831
XM_036966316.1 mRNA upstream 164205 27909214 ~ 27922229 (-) False LOC110508834
XM_021589680.2 mRNA upstream 164205 27909214 ~ 27924372 (-) False LOC110508834
XM_021589678.2 mRNA upstream 164205 27909214 ~ 27924379 (-) False LOC110508834
XM_036966317.1 mRNA upstream 164205 27909214 ~ 27924379 (-) False LOC110508834
TU2426633 other downstream 1671424 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1790180 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2466007 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2592113 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3005646 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 799932 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 799932 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 882046 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 917699 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 947130 28692139 ~ 28692470 (-) True G2125290

Expression Profile