RNA id: TU2429093


Basic Information

Item Value
RNA id TU2429093
length 500
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2124521
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27941117 ~ 27941947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTATCAATCATTTTGCTAGTACCATCATTATCTCATTGGTAATGGACTTTACCGAACATGATGTTGTATTTGGAGTCTCCATGCATGTCTGCCTGATCAAGGTCAGCGGGGAATAGTTTGATGTAGCCTCCCCCACAGTCGATGTTCTGCTCGTGCTTCACAGTGAACTGGATCACCAGGGTCTTGCCCTGGTTGCTGAAGGGCTCAAATCGAGCAGAAGAAGAGTAGAAGCGGGCATCCTGGCTGGTCTGGAGACCTTGTCTTTCTCTGGATCTCCATAGAATTTCCCAGGTGTCAGGACAAATTCCCCGTAGTCAGACCTATGGCTGGATTCAACCCACCGGGTAGTCCAAGAATCTGACAGCAAAAACAGAATCAAATACTAGAAAGGCCACAATATTGGCATAGGTGAATACAAATTTAGCTAACGTTAAAGGTTTATTCAAGCACTAGGCTAGCGTCACCCGTTGGCTAGGTACATTTAATTAGCTGGCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2428956 lncRNA downstream 196108 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA downstream 196108 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA downstream 196108 27740633 ~ 27745009 (-) True G2124408
TU2428889 lncRNA downstream 295862 27617358 ~ 27645255 (-) True G2124352
TU2428872 lncRNA downstream 354196 27586698 ~ 27586921 (-) True G2124335
TU2429089 lncRNA upstream 1428 27943375 ~ 27944688 (-) True G2124520
TU2429145 lncRNA upstream 52452 27994399 ~ 27994967 (-) True G2124562
TU2429151 lncRNA upstream 55330 27997277 ~ 27998017 (-) True G2124567
TU2429210 lncRNA upstream 143169 28085116 ~ 28086921 (-) True G2124618
TU2429261 lncRNA upstream 199807 28141754 ~ 28141985 (-) True G2124663
XM_021589685.2 mRNA downstream 3305 27933209 ~ 27937812 (-) True LOC110508837
XM_021589684.2 mRNA downstream 3394 27933209 ~ 27937723 (-) False LOC110508837
XM_021589686.2 mRNA downstream 3407 27933209 ~ 27937710 (-) False LOC110508837
XM_021589683.2 mRNA downstream 11021 27923767 ~ 27930096 (-) True mrpl37
XM_021589677.2 mRNA downstream 16735 27909214 ~ 27924382 (-) False LOC110508834
XM_036965971.1 mRNA upstream 22939 27964886 ~ 27984135 (-) False LOC110508841
XM_036965969.1 mRNA upstream 22939 27964886 ~ 27984136 (-) False LOC110508841
XM_036965970.1 mRNA upstream 22939 27964886 ~ 27984136 (-) True LOC110508841
XM_021589692.2 mRNA upstream 57114 27999061 ~ 28002198 (-) True LOC110508843
XM_036966771.1 mRNA upstream 102903 28044850 ~ 28068458 (-) True LOC118944862
TU2426633 other downstream 1871908 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 1990664 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2666491 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2792597 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3206130 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 602994 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 602994 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 685108 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 720761 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 750192 28692139 ~ 28692470 (-) True G2125290

Expression Profile