RNA id: TU2429145



Basic Information


Item Value
RNA id TU2429145
length 497
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G2124562
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 27994399 ~ 27994967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAATATCATCAATACATCATCAGGAAACATGCAGCGGGCACCTCTTCCTCCCTGTTGAGAGACCATGGTCCTCTCGTATTTCCCAGAGTTCAGCTCTTTCAGGACTTTCATGATCTCGGTGATGCGAGCTGTGAACCTGTAGGGGGACAGCAGGGGTCAGTGAGGAGGCGACAGCAGACGTCAGTGAGGAGGCGACAGCAGACGTCAGTGAGGAGGCGACAGCAGACGTCAGTGAGGAGGAGACAGCAGGGGTCAGTGTGGGGGGGACAGTAGGGGTCAGTGAGGAGGGGACAGCAGGGGTCAGTGAGGAGGGGACAGCAGATGGAGGGAAAGAAGAACAAGTGGAGCAATCTCAGACCATTAAACCAGTGAACAATAtaactggtcccagatctgtttgtattcTTACCATCTCCATTGCTGTCATTATCAGGCCAAACAGTCTAGCCTAACAGCAATCTTCAAATATGAACATTAATGAGTTTGAGGAGAACAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2429089 lncRNA downstream 49711 27943375 ~ 27944688 (-) True G2124520
TU2429093 lncRNA downstream 52452 27941117 ~ 27941947 (-) True G2124521
TU2428956 lncRNA downstream 249390 27740633 ~ 27745009 (-) False G2124408
TU2428958 lncRNA downstream 249390 27740633 ~ 27745009 (-) False G2124408
TU2428959 lncRNA downstream 249390 27740633 ~ 27745009 (-) True G2124408
TU2429151 lncRNA upstream 2310 27997277 ~ 27998017 (-) True G2124567
TU2429210 lncRNA upstream 90149 28085116 ~ 28086921 (-) True G2124618
TU2429261 lncRNA upstream 146787 28141754 ~ 28141985 (-) True G2124663
TU2429433 lncRNA upstream 369229 28364196 ~ 28364426 (-) True G2124826
TU2429461 lncRNA upstream 387745 28382712 ~ 28382993 (-) True G2124852
XM_036965969.1 mRNA downstream 10263 27964886 ~ 27984136 (-) False LOC110508841
XM_036965970.1 mRNA downstream 10263 27964886 ~ 27984136 (-) True LOC110508841
XM_036965971.1 mRNA downstream 10264 27964886 ~ 27984135 (-) False LOC110508841
XM_021589685.2 mRNA downstream 56587 27933209 ~ 27937812 (-) True LOC110508837
XM_021589684.2 mRNA downstream 56676 27933209 ~ 27937723 (-) False LOC110508837
XM_021589692.2 mRNA upstream 4094 27999061 ~ 28002198 (-) True LOC110508843
XM_036966771.1 mRNA upstream 49883 28044850 ~ 28068458 (-) True LOC118944862
LOC110508200 mRNA upstream 198909 28193876 ~ 28367209 (-) True LOC110508200
XR_005040275.1 mRNA upstream 403538 28398505 ~ 28403893 (-) False LOC110508849
XM_021589702.2 mRNA upstream 468514 28463481 ~ 28506939 (-) True plppr5a
TU2426633 other downstream 1925190 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 2043946 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2719773 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2845879 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3259412 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 549974 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 549974 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 632088 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 667741 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 697172 28692139 ~ 28692470 (-) True G2125290

Expression Profile