RNA id: TU2429210


Basic Information

Item Value
RNA id TU2429210
length 1777
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2124618
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28085116 ~ 28086921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATAGCTTGCATATTCTCACCCAGAGATCCAACAGGGAAACCTGAAAGGCATAATGCAAGATTCTTGCATTTAAGGCCATGTTCTGCTTACCCGGAGccggagtcagatgaacttgcggataccatttttatgtctctgcacaCAGCATGAGGGAAATAGCGGTagtttagctagccaacgttaaaTAGCGATAGCACAAGGACTGGAAGTCTAAAGGTACAGTagcattgctattctaacttcatACTGCATGCAGACATACACGTTCATCAGACTCTGGGTAACAAGAAAACGGGATTAAATGCGAGAATCTTGCAGTATCCCTTTAATTACATTTTTCACATTACATTATGAAGCTTGGCTTCTGAAGTTTGATTTGTAATTTGTGAACTGTGTGGAGATGCTTGTGTGAAGTTATAGTGTGGGTGTGTCGGTTAGACATAAGTGCACTTTTATTGCTGTTATCATGAATCACACTCAGTAAGGTCACTTCTAGAGATAAAATTACAATACATTCTGGCATTTGTTTGCTGTGCTTTGTCTAAATCTACCCTGATACTTTATGTGCATGACTAATATTTCCTAGGCCTACTGCATGAGCAGGCTCCTGAGCATAGACTTCAGTAGTCTGACAATATACTTCTTTTACATCCTAATGCTGGTGAAAACACAGATTTCAAGTAAGGATTTTATTTTTGTACAATATCTCATGATATAAACATTACAAAACTATGTGAGTTCCTTTAACATTCTCTTCCATGTCAGTTCATGTAATTGTGGCAATACACACAAGACACCTTTGGGTGGACATACATACAATTTACAATCCAAGGGTCCAACAGAAAAGAGGACCTGTGCTTTAGAgtattgtctgtttgtttccatCCACTTCCTCCATCTGTAAGGATCAAGAGAAGACGCAATCCAATGGCCTTTACCATGTCCCCTCCCATCATTTTGGAGGACTGTAGAGCTTGTTCAATTGGCAGTGTTCTGGGCAAATAAGTATAGTGGTACACAATTTACCTAGGGCTGGTCATGGGATCCTAGGGAGTCTCAAGACATTTCCAGTCCATGAACCATTTGATCCAAAAATGTCCATGAACCATTTGAACCAGACATACAATAAAATAACTCCACCATAGCCTTGTGCAACCTCTCAGTGCACTTTCCCATTCTGTAGTTTTTCCACTTTTACCTTTCCGGGAGAGCGCAGGACGCTAATGCAGCCACGGGCCATTTTATGCATCCACATGACGTTCATAATGTCTAGACAGAAACTGGGGCCCATCCATGCACAACGGCCACCAAAAGTCACCCGGTAGAAAGGTTCTGTCCCGTACACGGCGTACATCCGGCTGTAATACATTGGCATGACCGCTATCCTCACCAGGAAGAAGGATAGCGTCATGGCAATTCCGTTGACCATATTTGGTAATGATTTCTTTGGGTAACCAAGCACTTCAAAGAACCAGCTGAAAGATAGATACAGTTAGTATAGTTACAGAGTGAGATAGCAGTTGTAGAATTCAATTGTAATGGAGTCATGGATATCAACTGGCATTGTTCCAGAAAGGTGGCTCTTAAgacatatctacagtataccaAGAACTTAAAGGTTTTAAGTACAATTCCTtagggaactgcccctccctaccttcaagCCTATGCTCAAACACTACACCCTAACCCGAGCaatccgttctgccacctctggccTCTTGGCTCTCCCAACCCTACGGGAGGACTCtttcctggcaccccaatggtggaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2429151 lncRNA downstream 87099 27997277 ~ 27998017 (-) True G2124567
TU2429145 lncRNA downstream 90149 27994399 ~ 27994967 (-) True G2124562
TU2429089 lncRNA downstream 140428 27943375 ~ 27944688 (-) True G2124520
TU2429093 lncRNA downstream 143169 27941117 ~ 27941947 (-) True G2124521
TU2428958 lncRNA downstream 340107 27740633 ~ 27745009 (-) False G2124408
TU2429261 lncRNA upstream 54833 28141754 ~ 28141985 (-) True G2124663
TU2429433 lncRNA upstream 277275 28364196 ~ 28364426 (-) True G2124826
TU2429461 lncRNA upstream 295791 28382712 ~ 28382993 (-) True G2124852
TU2429481 lncRNA upstream 308863 28395784 ~ 28396006 (-) True G2124872
TU2429492 lncRNA upstream 311623 28398544 ~ 28403719 (-) True LOC110508849
XM_036966771.1 mRNA downstream 16658 28044850 ~ 28068458 (-) True LOC118944862
XM_021589692.2 mRNA downstream 82918 27999061 ~ 28002198 (-) True LOC110508843
XM_036965969.1 mRNA downstream 100980 27964886 ~ 27984136 (-) False LOC110508841
XM_036965970.1 mRNA downstream 100980 27964886 ~ 27984136 (-) True LOC110508841
XM_036965971.1 mRNA downstream 100981 27964886 ~ 27984135 (-) False LOC110508841
LOC110508200 mRNA upstream 106955 28193876 ~ 28367209 (-) True LOC110508200
XR_005040275.1 mRNA upstream 311584 28398505 ~ 28403893 (-) False LOC110508849
XM_021589702.2 mRNA upstream 376560 28463481 ~ 28506939 (-) True plppr5a
XM_021589710.2 mRNA upstream 545794 28632715 ~ 28639924 (-) True LOC110508854
XM_036966330.1 mRNA upstream 619167 28706088 ~ 28753168 (-) False LOC110508857
TU2426633 other downstream 2015907 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 2134663 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 2810490 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 2936596 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3350129 24730674 ~ 24734987 (-) True G2120836
TU2429842 other upstream 458020 28544941 ~ 28551514 (-) False G2125203
TU2429843 other upstream 458020 28544941 ~ 28551514 (-) True G2125203
TU2429906 other upstream 540134 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 575787 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 605218 28692139 ~ 28692470 (-) True G2125290

Expression Profile