RNA id: TU2429843


Basic Information

Item Value
RNA id TU2429843
length 6520
RNA type TUCP
GC content 0.45
exon number 3
gene id G2125203
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28544941 ~ 28551514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGACCTCATAGAATGGTGAAATACAGAGTGACTTCTGACGGAGACGTCTGTTTCGTTAGCAACCACGCTATCCACCAATCACCACGTCTATTCTGAATGCACACAGGCCAATCTTACAGATGTATAATGAAGCCAACTGACCTAGCAACCATGGAAATATAATGACTAGATTATATTTCTAtaaattctatttctatgctctCAAGTCTATACAAATACATCCTCTGCCTAAACGTCAAACATCTTCTTCTGCCAAACCTGATTTCTTTCTGTAGATATGTTGTCCTACCTACTCTACACTGTAACAGCATTGTCTGCATGGCAAAGTTACAAAGATTGTATTTACAGTGATAGAAAGAATGAAGAGTTAATcaattggttgattgattgatgaattgAGTAGGTATAAATCAAGGTACCAGCCATAACTTTCAAAAGGTGTCATATACAGAAAATAAGCCTTTAGATACAGTACATATAAAATGACCATGCAGATATGACCACAGTTTAAAGCCATCATCGAAGGTACAAGTATACAGGAAAATATACCAATTTTTCCCTTCAGTTGTCGCTGCTAATATACCCTTTGAGAAGTAAAAAATATGTGTAATATTTATATAATATCAATTCAGTTTCaatggaaaaaaaagaaaacctTGATTATTGATAGAAATGTTCAACAATATCTAAAATGTATACATCCAGTCTTACTTTTGTATTATTGTGTACAAACCAGGAGTTGGAACCAGctcagggaacagaaccaaaaactggaaataaacaacatttttcaaggaacagaatcagaaccggGAATGAAAGTGATTTATACTGTTCCGGAACATAACTCTTATTTTAAAAGGATGGGAACCATTTAATAACGTTATTTTATGCTCCAGGCATGTTTTTTTCTGTCCCACAAAAAAATGCTACAAAGTGCCTATacaaagccctcactctgtcactcagaaacacattccagtgtctgcctgacTGCCAGCTGAAAgtcttaaattattatttttttactttgtggtatccaattagtagttacagtcttgtctcatcgctgcaactcttgTACGGACTCgaaagaggcgaaggtcgagagccgtgcgtcctccgaaacacaacaaagccgcactgcttcttgacacaatgcccacttaacccggaagccagccgcaccaatgtgtcggaggaaacaccgtacacctggtgactgtgtcagcgtgcactgcgcccggcccgccacaggagttgctagtgcgtgatgggacaaggatatcccggccaaacccttccctaacccggacgacgctgggccaattgtgcgccgccctatgggtctggagcctggactcaaactcagaatctctagtggcacagctagcactgcagtgccttagaccaccatGCCATCGGGAGACACAGATGAAAATCTTtgcctgtgtgtgtacgtgtgtaggctacctgcccctcccaTCTGAAGCATAGGCTACTGCAGCCTACTTACATTACTAGCGTGATTCATAAATTAGGGAGAAACATTTTTAATTGGAGAAGAATGGATTCACTATTTCAATGCTTGTTAAGGATACTATAGTAATtacgtttcacattggatttattaactacaaaaaggtagGACGTGTTTGTTATTTATTATTCTGgtgccgctctgcacacacaagcttacaagctagctctggtccaacgttaAACCAACTCtcggaagttcaaagacattcaatgTTCCTCCATAGAAGCCCCTCCTACAATTCTGTAGGCCTAATTGAGATCATGCATGTCTTAACAAGATGCCCAGTGTTgttctctccccACCCGCAAAATTTCTGTCACATCTCACAACCTACAGTTGTCTGTCCAATGTAAACACCTATagctccatagcaagctgctctatccacTGATTGATTAAgtcatttaaatatatatatattttaaaaggtttaaaaaggaacagaaacgATATTAACCATTTTTGGGGTTCGAACCGTTTCAGAACTTTATTTAGCTGGTCGGAACAGTATAAaggaacaacaaaaaaagaatggTTGGTACTGTTCAGAACGAAACGATTGGAAAAGAATTTCAGTTCCAACCTCTGGTACAAACACAAACAAGCTCAATACATGAATTATATTGGTAATCCAAATGCAACTGGCATATTATGACCACTGTAAAAACGAGTGTAAACACTATTGTAGCTATCTCAGGTGTCATGAGTAAAGCTAGTGTTCTATGCACATAGCACTGTATATCAGGGATCTCAAACTGACAGGCCTCATTAAAGACAGAATGTGGAACTGGGTGAAATGTCTTTGAGACCCCTGATGTATATGAACAGTACGTTCTTGGCAGTTTTATAAAGGTAtcagaggctggtgggaggagctatatgaggacgggctcattgtaatggctggaatgaaaaAAATGGTTTCCATATGCTTccgtatgtttgatgtgtttgataccattccatttattctattccagtcattacaatgagcacatcctcctatagctcctcccaccagcttccTCTGCAGCATAGTATACTAtacaggtcgcaattgtaaattagaacttgttctcaacttgcctgcctggttaaataaaggtgaaataaataaataaatatgtactGTAAAAGCCACACTTTCATTCATGTATTGTTGATTGGCCCTACCTTTGCACAACAAACGGGATAAAAATCATTGAAAGGTTTTCATTGAACAATTATATTGTTCAATGGCAGCATATAACACACATAGAGTAATGTTAGAATTACAGTGCCACTAATCAATGGTAGTGTTTGTAATGTTATTTTTGCACTTACATAGTTTGGATACTGAGTATGACTCACTTGTTTACTGTTCTcttgtgggagggagagggatgctATTGCCATTATACAACCTCTCCTCAGTCCTGAATCGTGCATGGTTCATTATCGCCCAAGGAACACTAATGTATGATTGATTTTAATCTAACAGCATAACCAAAGTTCCCAGCACAGGCTGTGCTGCCACATTGTCCAATCGGGAAAATCAAACTGGACAATTAAATCAATTATTGTGCACATATCAATGTACCAGGAAGAGCAGCCTCTACCGAGAGTGGTTTCCCTTTTATGTCACTCATCAATAGATACATTTACTTAAAACATATTTGAGTAGCATTAAAAACTTGTACAGCTGTTAAACATTTtgcagaaaaaaacaaacattttcttaAACTACCATACAGGTTGCTAATAGGAAAAAGGTCACTGTATGTATCAAAAAACAGCGAATACTTGTTAGTATACTTCGTCAAAGGCAATACAGGATGCAAAGTGTAAAGTTCCTCTTGAATTTCCAGTCTTTAAGCAAAACTAATTTGATTAAGGTACTGTATCCACTGCTCCTGGTAAGTAATTATCTTACATAGTTAATCCACTGCTCCTAGAAATATATTGTCTTACATACTGTATCCACTGCCCCTATTAACATACTTCATTTGCTGCCCTTGTAAGCTAAGAAAAGCATGTTATACTGTTCGAGGGATACAATGTGTGGCTAAAGCACAGGGAAAGACTGGTGTGTTCACAGCGATAATTAGGGTTGCAAAATGATGTTCATTtccccaaaattcccaggttttacagaaatcccagttggaagaACCCTGGAGTCGTGAGGGaattcaaccaggatttctggacaACCAGGAAATTTGTGGAAAGTTAACGGAATTTTGCAACCCATGGATAATATTTGGTGATTTCTTAAAACATTGCTCTGTTGTAAATCACCTGCCAAACAAATTCATATCCCGCAAAAGttctaaaaacaacaacattgaataAACCCATATTTGTTAAAATAGACTATCAATAATTAGTAATAAGCCAATGAAGACATCTGAATATTGTTGCAGATCAATCGGGGGAACTATAAATATGTACATagcaaaaaatataaaaatgtattttcacaATTGTCATGGTTCGTCGTCTTATGAAAAGCCCCTCCAGTGTTGCTATGCAGTGCAACACCCAATCATGGTCACATTACACAAGGACATTTATATGTTGCTGAGAAAGCGCACAGTACATCAATGGAAAAGGCCTACAAAACATCATGTCCATCAACTTAATACATAACCTGCATGGTTCATTGCCATCAAAGCCTCTTGCAATTTGATAACAAATAGTATCAAATTCGAAGTTAAAACCACTATAGCCATTGTATTAAAAGAGTTAGTACTTGTGCTTGTCAAATGGAAGTTTATGTAATGAAATAAGGTTTGAAAGGTGTGCGCAAAATGACTTTGTGGCGATTATTCCAGCATCTCCTGCATTGTTTCATTTTCAAATCAAAAAAGAACCATGGTGCTTGGCTGGTGCGTAAAAACCACGAATTCAGACAAACAACGAGGTGAAATGGGTCTGCACTCAAAAATCTGTCACATAAAGCTTActtcattaaaatatatatatttttactgcaTTTctcaaagaacacacacatacatttaatCCGGTCCTATCAAACCAAGTCTAACAACAAACTgctgaaaacaaaaaaaaaaaacagatttttgCAGAATGGAAAAACACTGTAGTGGCCTTCCTGTACTAGACACACTGAGCTAGCTAATGAATTATGACCTTCAGAATGGCACTGGAAAAGGTAAGCCAGCCCAGTTAACACCACTGAATCCATGATGGGTTTGATAATATACAGTCGTAGCTGAATGTGTTCAATGGTCCTATTGTGGGTTCCAGACTAGACCCAGTGTAGAAGGCCACTCATGGGGGGACAGATAGGCCACCACATGGGCGGTAAGGGGGAATGGTAAGGGTAAGGGATGACTGGGGCAGCTGTTCACTCTCTATAGGCCAGTCCCAGGGTGGGGGGCGGTGTGGGGGAGGTCCCTTTGAAATAGTTCCTGGAGTTGTCTGGACTCTGACCTCTATCCGGGAGCAGGATGATGTTGCCTTTTCTCCGCAGGGTGGACTCCCTGCTGGAGGCGATGGAGAGGGTCTCGGAGGCGGCCTCACttcctcctcctagtccctccACAGGGGTCACACGGATGGTGGTGATGCcttggtgggggtggtggtggtggtggtagtgagggTGGTGCACGTGTGGGTGACCGCCTCCCCCACTGCCACCGCCATGCTCGCTGCCGGTGTCGGTGCCTGtctggctcctcctgccatcgAAGGAGCCGTAGCCGTCCTTGAGCGAGTCGCAGCTCTCCGTGTCACGGTTGAGGTCGTTGAGCTCGAAGGCCTGGCGGATGCTGCCACGCTGCTCCTGGGGCTTCCACCTCCAGGAGCCACTGCCGTCCGGAGGCTTGATCACAGGCTTGTTCTCTGGATGGGCCTCCACCCTCACGATCCCCTGGCCGGCCTCCTGGTCCATCAGGGCCTTGTACTGGATGGAGCCTGTGCAGCTGACCACGCTGCCGTCCTCGGAGCTCTTGGGGCTGCCGTGCTGGAGCAGACCCTGCTGCTTGGACATGGTGATGACCTGCATGATGCGTGGCTGGTTAGTTAGACTGTTAGTCCTGCAGGGGGCGCCCTCCTTCAGCCACTTGGAGCGAACCGAGCCTCCCCCACCAGGAATCCCACCGCCGCCATAGTTATCCTCCCTGTCGTCATCATCCTCGTCCTCCCTACTGGAGGTGCCGCTGTTGACGTGCTCCTGCGTCTCCTCTGGGATGTGGACGAGCTGGGAGGAGCCTGGCCGGGACTGGATGGACACGCGGGCCCCCCCTGCCAGGCCACTGCTGCCCCCGTTGTGGGGGAGGTGGTTGGACAGTGGCACGGTGCTGGCTGCCAGCTTCATGTACTGGGCGGGGATGTGTCCCTGAGCACGAAGCTCTGCCTCCAGGCCCATGGCGGATGGCTCAGAGCTGCACCTCAGCTCCATGGTCCTCTgaggcgaggaggaggaggatgttgaaTGGTGGCGTCCCACAACCACCCCGCTGTCCATCACCTGAAGAGAGAGCTTCCGGTTCTCGTTCTTGCTCTTCCACTGAGACAGCAGCTGCTTGGAGCGCGTGGAGTCCATGGAGGAGTGGATGCTGGCGTGGCGGCGAGGGACGCGGTGCTCCTCGGGTAGTGAGCCACCATGTGACCTGGGTAACGTGCTACTGTTAAAGGTCACCAGACAGTCCTGTTTCCCCATGGGACTCGGCGGGGTGATGCACTCCAAATCGGCGCTGGCCCTCTTCAGATTATTCAGGGAGCTGGACTCGCGGCAGGAGGGCACCCGGGTCAGGATGGTCTCGGGGTGGGCCGCGGTGAGGCCGTCCGCTGTGCTCACGCTATTTAGGCTGTTCATGCTGTTGAGGCTGTTGGGCTGCAGGTGGCGACCTGCATTCTGGCTGACGTTGGGCACAGTGTTGCTCCTGGGGGGCTCTCGGAGCGGGGGAGGCTGGGGCTGCTGTCTGGATGTGTCCTCACTGGGCTGGAAGTTACCCACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2429836 lncRNA downstream 4567 28538254 ~ 28540374 (-) True G2125197
TU2429781 lncRNA downstream 87318 28457381 ~ 28457623 (-) True G2125143
TU2429767 lncRNA downstream 104869 28439793 ~ 28440072 (-) True G2125130
TU2429525 lncRNA downstream 123729 28421007 ~ 28421212 (-) True G2124908
TU2429521 lncRNA downstream 125680 28418918 ~ 28419261 (-) True G2124904
TU2429913 lncRNA upstream 88690 28640204 ~ 28641164 (-) True G2125259
TU2429929 lncRNA upstream 115027 28666541 ~ 28667665 (-) True G2125272
TU2429973 lncRNA upstream 188690 28740204 ~ 28740958 (-) True G2125314
TU2430015 lncRNA upstream 214482 28765996 ~ 28766210 (-) True G2125328
TU2430023 lncRNA upstream 217065 28768579 ~ 28768817 (-) True G2125336
XM_021589702.2 mRNA downstream 38002 28463481 ~ 28506939 (-) True plppr5a
XR_005040275.1 mRNA downstream 141048 28398505 ~ 28403893 (-) False LOC110508849
LOC110508200 mRNA downstream 177732 28193876 ~ 28367209 (-) True LOC110508200
XM_036966771.1 mRNA downstream 476483 28044850 ~ 28068458 (-) True LOC118944862
XM_021589692.2 mRNA downstream 542743 27999061 ~ 28002198 (-) True LOC110508843
XM_021589710.2 mRNA upstream 81201 28632715 ~ 28639924 (-) True LOC110508854
XM_036966330.1 mRNA upstream 154574 28706088 ~ 28753168 (-) False LOC110508857
XM_036966331.1 mRNA upstream 154574 28706088 ~ 28753168 (-) False LOC110508857
XM_036966332.1 mRNA upstream 154574 28706088 ~ 28753168 (-) False LOC110508857
XM_036966329.1 mRNA upstream 154574 28706088 ~ 28753680 (-) False LOC110508857
TU2426633 other downstream 2475732 25867301 ~ 26069209 (-) True LOC110508791
TU2426815 other downstream 2594488 25946733 ~ 25950453 (-) True G2122515
TU2425648 other downstream 3270315 25198248 ~ 25274626 (-) True G2121457
TU2425635 other downstream 3396421 25144062 ~ 25148520 (-) True G2121444
TU2424996 other downstream 3809954 24730674 ~ 24734987 (-) True G2120836
TU2429906 other upstream 75541 28627055 ~ 28685735 (-) True G2125253
TU2429926 other upstream 111194 28662708 ~ 28663426 (-) True G2125270
TU2429949 other upstream 140625 28692139 ~ 28692470 (-) True G2125290
TU2430463 other upstream 333954 28885468 ~ 28885854 (-) True G2125723
TU2430562 other upstream 526525 29078039 ~ 29078744 (-) True G2125813

Expression Profile