RNA id: TCONS_00055670


Basic Information

Item Value
RNA id TCONS_00055670
length 985
RNA type mRNA
GC content 0.46
exon number 2
gene id XLOC_028714
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 18453702 ~ 18455480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATCGCAAGTGTTCCGCAGCCTCACTGTTGTACATGTAACATGTGAAGATCGAGTTTACATCCTGCATTGAGGACAGGCGAGTGAAATCCCAAGaGGATGTTAAGACTGAGGGTATTCGACAGACATAAGAGGTTATGGAGCGTCCTGCAGTCAACAATAAGGGGAAACAACATTTCAAATCACATCCCAAACACCACATGCAGATCTTCAGCTCCACCACATTTATGTGCACGACAAAGAGCCTTTTACTCTCAAAACTCCCCTAAAACTCCAAATCCAGGCTCGTCCGCAGGCATCAAACTGCGCACACGCTTGGTGGTGACGCTGCTTTTTGGAGGTGGCATCATTGGCACTTGGTGGTACGTGCATCAGGAGAAAGAAAAGAGGATTCAGATGCAAAGACTGGAGCAGTTGCGAAAAGTGGCTCTCGGACAGGGAGATTTCCATTTGCTTGATCATACGGGACAGCGCAGAACCAAACGAGACTTTCTAGGACACTGGGTGCTGTTATATTTCGGTTTTACCCACTGTCCTGATATCTGTCCTGATGAGCTGGAGAAGTTGACCAGCGTGGTGCATATTTTGGATAAAGACCCAAGCTTGCCTTCTGTTCAGCCTCTTTTCATCACTGTTGACCCAGAGAGAGATGATGTTTCTGCTATGGCCAGGTATGTGAAAGATTTTCATCCCCGTTTGGTTGGACTGACCGGGAGCGCGGAGGAAGTGAAGCAGGCGGGACGGGATTTTAGGGTTTACGCCAGTAATGGGCCCAAAGATGAGGATGGGGACTATATTGTGGATCACAGCATAGTCATCTACCTGGTCAACCCGGATGGACTGTTTATCGACTATTACAATAGGATGAAAAATGACACCCAGATTGCTGAGAGTATTCGCAATCACATGAAGACCTTTGTTAGATTGTTTCCTGATTAATCTGAGCGAGACGAGTTGTGAGTGTAAATAAAGGTAAATTTTGAAAT

Function

GO:

id name namespace
GO:0008535 respiratory chain complex IV assembly biological_process
GO:0001654 eye development biological_process
GO:0006825 copper ion transport biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0006878 cellular copper ion homeostasis biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
ko05230 Central carbon metabolism in cancer
ko03110 Chaperones and folding catalysts
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-041210-173 Predicted to enable protein-disulfide reductase activity. Predicted to be involved in eye development and mitochondrial cytochrome c oxidase assembly. Predicted to act upstream of or within cellular copper ion homeostasis and respiratory chain complex IV assembly. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease; fatal infantile cardioencephalomyopathy due to cytochrome c oxidase deficiency 1; hypertrophic cardiomyopathy; and myopia. Orthologous to human SCO2 (synthesis of cytochrome C oxidase 2).

Ensembl:

ensembl_id ENSDART00000150221

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00058187 lncRNA downstream 570772 17875071 ~ 17882930 (-) True XLOC_028707
TCONS_00058186 lncRNA downstream 570825 17875071 ~ 17882877 (-) False XLOC_028707
TCONS_00058185 lncRNA downstream 571083 17875071 ~ 17882619 (-) False XLOC_028707
TCONS_00058184 lncRNA downstream 571205 17875071 ~ 17882497 (-) False XLOC_028707
TCONS_00058183 lncRNA downstream 879020 17571295 ~ 17574682 (-) False XLOC_028696
TCONS_00055681 lncRNA upstream 150455 18605935 ~ 18606567 (-) True XLOC_028717
TCONS_00057349 lncRNA upstream 199202 18654682 ~ 18679692 (-) True XLOC_028721
TCONS_00058188 lncRNA upstream 257283 18712763 ~ 18714926 (-) True XLOC_028722
TCONS_00058189 lncRNA upstream 497002 18952482 ~ 18954075 (-) False XLOC_028727
TCONS_00058190 lncRNA upstream 497002 18952482 ~ 18964897 (-) False XLOC_028727
TCONS_00055668 mRNA downstream 16803 18432182 ~ 18436899 (-) False XLOC_028713
TCONS_00055669 mRNA downstream 18778 18432853 ~ 18434924 (-) True XLOC_028713
TCONS_00055667 mRNA downstream 37136 18383253 ~ 18416566 (-) True XLOC_028712
TCONS_00055665 mRNA downstream 137790 18283122 ~ 18315912 (-) False XLOC_028711
TCONS_00055666 mRNA downstream 143785 18289119 ~ 18309917 (-) True XLOC_028711
TCONS_00055672 mRNA upstream 44532 18500012 ~ 18512550 (-) True XLOC_028715
TCONS_00055673 mRNA upstream 137263 18592743 ~ 18595525 (-) False XLOC_028716
TCONS_00055675 mRNA upstream 141682 18597162 ~ 18606524 (-) False XLOC_028717
TCONS_00055677 mRNA upstream 142185 18597665 ~ 18606573 (-) False XLOC_028717
TCONS_00055678 mRNA upstream 143600 18599080 ~ 18606524 (-) False XLOC_028717
TCONS_00055660 other downstream 264182 18189406 ~ 18189520 (-) True XLOC_028709
TCONS_00055659 other downstream 364696 18035497 ~ 18089006 (-) True XLOC_028708
TCONS_00055658 other downstream 415155 17999517 ~ 18038547 (-) False XLOC_028708
TCONS_00055657 other downstream 504384 17915932 ~ 17949318 (-) False XLOC_028708
TCONS_00055647 other downstream 715890 17736443 ~ 17737812 (-) True XLOC_028702
TCONS_00055674 other upstream 138350 18593830 ~ 18595140 (-) True XLOC_028716
TCONS_00055676 other upstream 142180 18597660 ~ 18606538 (-) False XLOC_028717
TCONS_00055683 other upstream 197668 18653148 ~ 18653241 (-) True XLOC_028719
TCONS_00055684 other upstream 198675 18654155 ~ 18654261 (-) True XLOC_028720
TCONS_00055699 other upstream 591986 19047466 ~ 19047555 (-) True XLOC_028730

Expression Profile

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