RNA id: TU2430468


Basic Information

Item Value
RNA id TU2430468
length 258
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G2125728
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 28904201 ~ 28904458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacttggcgctccggtaccgcttgctgtgcagtagcagagaaaacaatctatgacttgggtgactggagtctctgacaattttatagactttcctctgacaccacctattatatatGTCCTGGATTGCAGTATGCttgggcccagtgatgtactgggccgtgcacactaccctctgtaccgccttacggtcagatgccgagcagttgccataccaggcggtgatgcaaccggtcaggatgctctcaattggtgcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430406 lncRNA downstream 2164 28901418 ~ 28902037 (-) True G2125667
TU2430465 lncRNA downstream 16130 28887337 ~ 28888071 (-) True G2125725
TU2430448 lncRNA downstream 38652 28865167 ~ 28865549 (-) True G2125708
TU2430439 lncRNA downstream 52851 28851147 ~ 28851350 (-) True G2125699
TU2430438 lncRNA downstream 53172 28850786 ~ 28851029 (-) True G2125698
TU2430487 lncRNA upstream 28201 28932659 ~ 28991064 (-) True G2125745
TU2430500 lncRNA upstream 44882 28949340 ~ 28954746 (-) True G2125754
TU2430538 lncRNA upstream 125219 29029677 ~ 29029969 (-) True G2125789
TU2430545 lncRNA upstream 137761 29042219 ~ 29042463 (-) True G2125796
TU2430532 lncRNA upstream 141117 29045575 ~ 29047410 (-) True LOC110508868
XM_021589730.2 mRNA downstream 2962 28893815 ~ 28901239 (-) True LOC110508862
XM_021589731.2 mRNA downstream 41831 28860725 ~ 28862370 (-) True LOC110508863
XM_021589728.2 mRNA downstream 63476 28817604 ~ 28840725 (-) False LOC110508860
XM_021589729.2 mRNA downstream 63476 28817604 ~ 28840725 (-) True LOC110508860
XM_036966715.1 mRNA downstream 144021 28757578 ~ 28760180 (-) True dusp12
XR_005040254.1 mRNA upstream 78641 28983099 ~ 28985289 (-) False LOC110508212
XM_036966774.1 mRNA upstream 78641 28983099 ~ 29003237 (-) True LOC110508212
XM_021589736.2 mRNA upstream 121550 29026008 ~ 29028895 (-) True LOC110508867
XM_021589737.2 mRNA upstream 141108 29045566 ~ 29073745 (-) False LOC110508868
XR_005040213.1 mRNA upstream 215926 29120384 ~ 29123806 (-) False LOC118944842
TU2430463 other downstream 18347 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 211731 28692139 ~ 28692470 (-) True G2125290
TU2429906 other downstream 218466 28627055 ~ 28685735 (-) True G2125253
TU2429926 other downstream 240775 28662708 ~ 28663426 (-) True G2125270
TU2429843 other downstream 352687 28544941 ~ 28551514 (-) True G2125203
TU2430562 other upstream 173581 29078039 ~ 29078744 (-) True G2125813
TU2430565 other upstream 214226 29118684 ~ 29123742 (-) True LOC118944842
TU2432085 other upstream 1496755 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1529977 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1649131 30553589 ~ 30555187 (-) True G2127455

Expression Profile