RNA id: TU2430557



Basic Information


Item Value
RNA id TU2430557
length 337
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G2125808
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29074777 ~ 29075113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTATTACTAAGCACGCAACTTAGTAATAGGCTATCATCACACATGGATGAATTACCCTTTTGACTTTGAAAAATTCCCCTGACATTTCAATTGAACCAAACAGGATAATAACGCACTATCACAAATTCATTTAAAAGTGACAGAAAATACATGGTATCAATGACAGGACAAAAAAACATCATGACAAGGTCAATCATTTACCTGGAAAGATCTTGGTGATATCTTATTTAGATGCAATTCACCACAGTTGAAGAAACTCACCTTCCGTGCCGATTTAAATTGACCAGGCACAACGACCCACAGCTAAACCTGCTCTATGTGGCACAAGCTTGAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2430532 lncRNA downstream 27367 29045575 ~ 29047410 (-) True LOC110508868
TU2430545 lncRNA downstream 32314 29042219 ~ 29042463 (-) True G2125796
TU2430538 lncRNA downstream 44808 29029677 ~ 29029969 (-) True G2125789
TU2430487 lncRNA downstream 83713 28932659 ~ 28991064 (-) True G2125745
TU2430500 lncRNA downstream 120031 28949340 ~ 28954746 (-) True G2125754
TU2430559 lncRNA upstream 941 29076054 ~ 29076542 (-) True G2125810
TU2430560 lncRNA upstream 1441 29076554 ~ 29076799 (-) True G2125811
TU2430561 lncRNA upstream 2033 29077146 ~ 29077512 (-) True G2125812
TU2430563 lncRNA upstream 3637 29078750 ~ 29079026 (-) True G2125814
TU2430564 lncRNA upstream 4416 29079529 ~ 29080258 (-) True G2125815
XM_021589737.2 mRNA downstream 1032 29045566 ~ 29073745 (-) False LOC110508868
XM_021589736.2 mRNA downstream 45882 29026008 ~ 29028895 (-) True LOC110508867
XM_036966774.1 mRNA downstream 71540 28983099 ~ 29003237 (-) True LOC110508212
XR_005040254.1 mRNA downstream 89488 28983099 ~ 28985289 (-) False LOC110508212
XM_021589730.2 mRNA downstream 173538 28893815 ~ 28901239 (-) True LOC110508862
XR_005040213.1 mRNA upstream 45271 29120384 ~ 29123806 (-) False LOC118944842
XR_005040227.1 mRNA upstream 63039 29138152 ~ 29141013 (-) True LOC110508284
XM_021589743.2 mRNA upstream 119485 29194598 ~ 29199181 (-) True LOC110508873
XM_021589748.2 mRNA upstream 125475 29200588 ~ 29203038 (-) True LOC110508876
XM_021589746.2 mRNA upstream 128451 29203564 ~ 29213045 (-) False LOC110508874
TU2430463 other downstream 188923 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 382307 28692139 ~ 28692470 (-) True G2125290
TU2429906 other downstream 389042 28627055 ~ 28685735 (-) True G2125253
TU2429926 other downstream 411351 28662708 ~ 28663426 (-) True G2125270
TU2429843 other downstream 523263 28544941 ~ 28551514 (-) True G2125203
TU2430562 other upstream 2926 29078039 ~ 29078744 (-) True G2125813
TU2430565 other upstream 43571 29118684 ~ 29123742 (-) True LOC118944842
TU2432085 other upstream 1326100 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1359322 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1478476 30553589 ~ 30555187 (-) True G2127455

Expression Profile