RNA id: TU2430561



Basic Information


Item Value
RNA id TU2430561
length 367
lncRNA type intronic
GC content 0.38
exon number 1
gene id G2125812
representative True

Chromosome Information


Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29077146 ~ 29077512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAATTTGTAATTTAATTTCAGTCAAATTGAATAGAATAGGTTGAACTAGCCaaagcataacacacacacacacacacacacacacacacacacacagcgctaaaAAATAGCTACACAACACCAGCACATCTGTTCCTCTAAGTGCTCCTGATGGTGGGAGGTGCTGACAGAAATAGAATGCAtagctctgtatctgtatctcaaGGTCAATTTACAGTAATTCATCTGACACATGATCACAGTTGTAAGCACACATTGATATGCTTTATAATTCCTGGATTGAACTAATCAATTACGCCTGGTTTGCTTACAAAACAATTGTTATTTCATTGAAAAGGAGGTGCATGTAAAACGTGCAACTAAGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2430560 lncRNA downstream 347 29076554 ~ 29076799 (-) True G2125811
TU2430559 lncRNA downstream 604 29076054 ~ 29076542 (-) True G2125810
TU2430557 lncRNA downstream 2033 29074777 ~ 29075113 (-) True G2125808
TU2430532 lncRNA downstream 29736 29045575 ~ 29047410 (-) True LOC110508868
TU2430545 lncRNA downstream 34683 29042219 ~ 29042463 (-) True G2125796
TU2430563 lncRNA upstream 1238 29078750 ~ 29079026 (-) True G2125814
TU2430564 lncRNA upstream 2017 29079529 ~ 29080258 (-) True G2125815
TU2430566 lncRNA upstream 3059 29080571 ~ 29081546 (-) True G2125817
TU2430611 lncRNA upstream 77717 29155229 ~ 29159013 (-) True G2125860
TU2430643 lncRNA upstream 99141 29176653 ~ 29274480 (-) False G2125875
XM_021589737.2 mRNA downstream 3401 29045566 ~ 29073745 (-) False LOC110508868
XM_021589736.2 mRNA downstream 48251 29026008 ~ 29028895 (-) True LOC110508867
XM_036966774.1 mRNA downstream 73909 28983099 ~ 29003237 (-) True LOC110508212
XR_005040254.1 mRNA downstream 91857 28983099 ~ 28985289 (-) False LOC110508212
XM_021589730.2 mRNA downstream 175907 28893815 ~ 28901239 (-) True LOC110508862
XR_005040213.1 mRNA upstream 42872 29120384 ~ 29123806 (-) False LOC118944842
XR_005040227.1 mRNA upstream 60640 29138152 ~ 29141013 (-) True LOC110508284
XM_021589743.2 mRNA upstream 117086 29194598 ~ 29199181 (-) True LOC110508873
XM_021589748.2 mRNA upstream 123076 29200588 ~ 29203038 (-) True LOC110508876
XM_021589746.2 mRNA upstream 126052 29203564 ~ 29213045 (-) False LOC110508874
TU2430463 other downstream 191292 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 384676 28692139 ~ 28692470 (-) True G2125290
TU2429906 other downstream 391411 28627055 ~ 28685735 (-) True G2125253
TU2429926 other downstream 413720 28662708 ~ 28663426 (-) True G2125270
TU2429843 other downstream 525632 28544941 ~ 28551514 (-) True G2125203
TU2430562 other upstream 527 29078039 ~ 29078744 (-) True G2125813
TU2430565 other upstream 41172 29118684 ~ 29123742 (-) True LOC118944842
TU2432085 other upstream 1323701 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1356923 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1476077 30553589 ~ 30555187 (-) True G2127455

Expression Profile