RNA id: TU2430611


Basic Information

Item Value
RNA id TU2430611
length 2282
lncRNA type intronic
GC content 0.41
exon number 3
gene id G2125860
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29155229 ~ 29159013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccataggctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtcctGATGTttccatagtctactgtactgatgttaccatagtctactgtactgatgttaccataggctactgtactgatggcTACtttactgacgttaccatagtctactgtactgatgttaccataggctactgtactgatggctactgtactgacgttaccatagtctactgtactgatgttaccataggctactgtactgatggctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccataggctactgtactgatgttaccatagtctactgtactgatgttaccataggctactgtactgatggctactgtactgacgttaccatagtctactgtactgatgttaccataggctactgtactgatggctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccataggctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccataggctactgtactgatggctactgtactgatgttaccatagtctactgtactgacgttaccatagtatactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtcctgatgttaccatagtctactgtactgacgttaccatagtctactgtactgatggctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgacgttaccatagtctactgtactgacgttaccatagtctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtcctgatgttaccatagtctactgtactgacgttaccatagtctactgtactgatggctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgaaTACTGTCctgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatggctactttactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgacgttaccataggctactgtactgatggctactgtactgacgttaccataggctactgtcctgatggctactgtactgacgttaccatagtctactgtactgacgttaccataggctactgtactgacgttaccatagtctactgtactgatgttaccatagtctactgtactgatgttaccatagtctactgtactgacgttaccataggctactgtactgacgttaccatagtctactgtactgatgttaccataggctactgtactgacgttaccataggctactttaggggttcccaaactttttcactctgggtcccccttccagcattggggaacatgtAGCGCCCCCCGTGCGTGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430566 lncRNA downstream 73683 29080571 ~ 29081546 (-) True G2125817
TU2430564 lncRNA downstream 74971 29079529 ~ 29080258 (-) True G2125815
TU2430563 lncRNA downstream 76203 29078750 ~ 29079026 (-) True G2125814
TU2430561 lncRNA downstream 77717 29077146 ~ 29077512 (-) True G2125812
TU2430560 lncRNA downstream 78430 29076554 ~ 29076799 (-) True G2125811
TU2430643 lncRNA upstream 17640 29176653 ~ 29274480 (-) False G2125875
TU2430673 lncRNA upstream 52933 29211946 ~ 29212438 (-) True G2125903
TU2430644 lncRNA upstream 111772 29270785 ~ 29274480 (-) True G2125875
TU2430657 lncRNA upstream 138793 29297806 ~ 29298278 (-) True G2125888
TU2430656 lncRNA upstream 139506 29298519 ~ 29299176 (-) True G2125887
XR_005040227.1 mRNA downstream 14216 29138152 ~ 29141013 (-) True LOC110508284
XR_005040213.1 mRNA downstream 31423 29120384 ~ 29123806 (-) False LOC118944842
XM_021589737.2 mRNA downstream 81484 29045566 ~ 29073745 (-) False LOC110508868
XM_021589736.2 mRNA downstream 126334 29026008 ~ 29028895 (-) True LOC110508867
XM_036966774.1 mRNA downstream 151992 28983099 ~ 29003237 (-) True LOC110508212
XM_021589743.2 mRNA upstream 35585 29194598 ~ 29199181 (-) True LOC110508873
XM_021589748.2 mRNA upstream 41575 29200588 ~ 29203038 (-) True LOC110508876
XM_021589746.2 mRNA upstream 44551 29203564 ~ 29213045 (-) False LOC110508874
XM_021589744.2 mRNA upstream 44551 29203564 ~ 29220510 (-) True LOC110508874
XM_036966624.1 mRNA upstream 69829 29228842 ~ 29232607 (-) False LOC110508877
TU2430565 other downstream 31487 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 76485 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 269375 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 462759 28692139 ~ 28692470 (-) True G2125290
TU2429906 other downstream 469494 28627055 ~ 28685735 (-) True G2125253
TU2432085 other upstream 1242200 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1275422 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1394576 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 1546072 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 2085078 31244091 ~ 31244692 (-) True G2128216

Expression Profile