RNA id: TU2430644


Basic Information

Item Value
RNA id TU2430644
length 1621
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G2125875
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29176653 ~ 29274480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCTTACATAAGAAAAGCACAAAATAATGTACCAATTATCATATTTTATTAATTTCGCTCTTACATTGCCAGCATACTTTATGCACAGTAAAATAACCAGGTTGACATTTTCATCCAGCCCTTAATATTTACTTCTAAACACTGGTTTAGTGAAGATAATGACATTTTATCCAGTAATCTTGAGCCTTGAACTGTTTCCGTAAACATGAGGACAGGACGTCAGATCAACTACCAAAGCTTGAAGATGTCCTTATCTTACTTTTACTGATCCATATTCAACTGACTGTGGATCAGTTGACAATCCCAAAGCCGCAAGAATAGGCAGGGCCAATCAATAgatacaaaatatttaaaaagtagATGAGGACTAGACCGCAAAAAACAATAGGACTGCTTATCATTACGTACCACTAATTTCTACCAAAACCATATAGTTTGCCCAACTTCTTAAACCAACGGCTTTGAGCATTCCATTTGTAAGACAAGTTTTTTAATTATAGACAATCAGGAACTCTTTGATTATAAGGtgtcatgtaaatgcatcataatgcCATAACTTCAATGTCCTAACTttctaaatacatggctctggttTCTACCATTTAGTTGTTCTTTTGGCATGAGTATTATATCCAGCTTCAAATCTTGTGCTAAGATTTGTGTTGCTGAATTTCTTTCCAGTCTGACCAAGGCATTTGGCCATTCTACCAAACAGAAAACATGTTCAAAGCAAAACAGAACATTTCTTTCAATACACTAAATTAAAGTAGAAATTATAGTTCATTTTACACACTGAAATTACAACAAAGTGGTGGCAAATAAGACTTCTAGAAAGGACCACCAAAAACAGAGCTCACAATTCCACAAGATGGCCAACTTGCCTGAGATTGACAGAGCACATCACCTTATTATTTCAGAAACCCCACTATTGGAATGCAGCTTGATGGCTTTTTGTTGTGTGCTGAAAATTGTTAACCTCTATCATTTAAGGCACAAGGTAGGAATGACTTGACAGAGCTTGCCAAAAGTAACCAGAGACAAATAACAAAGGTCGaacaaaataatacaaattaaGAACAGAAAGTCACAAAGTGCAAGACAGTGGCTCATCGTCCTTGGCCTAGCTGTGTGCAACTTAAGAAGACTGAGAATGTTGAGTGAAGGATAATGGGACGTCATCAAGCTGAGAGAGGTGGTACTTGGTTGGGCGGATACTGAGTGGAATGAACGGGGTGGACATTTCATCCTACATGCCCATCCGAATGCTCTGAATGATCTGGAAGatagCTGATCCACACACAACAAAGATGAAGAGGGCCAACAGCCATGGTCCCACAGCCACCTTATCATCTTGAGGGTTTCTCGTAGATTTGGCTACGTTGCCTCTTTGCGTGATATTCTTGCTGTGTTTTTCGTTGGCCATACGAATCCTCTGTTTGGCGACCATCTTCCAAATAAGTAGGTTATGAATTATTTTACAAAAATGTGGAATGTTAGTTATATGGTTAATCTGGCTCACTGGTATGCAGTTGGCACTCGTCTACTCTACAGTACAAAATGTTTCAAAAGGGAGAATAAAAGCAGGGCAAATGTCTACGTATGCAAAGTCTTAAGCCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430673 lncRNA downstream 58347 29211946 ~ 29212438 (-) True G2125903
TU2430611 lncRNA downstream 111772 29155229 ~ 29159013 (-) True G2125860
TU2430566 lncRNA downstream 189239 29080571 ~ 29081546 (-) True G2125817
TU2430564 lncRNA downstream 190527 29079529 ~ 29080258 (-) True G2125815
TU2430563 lncRNA downstream 191759 29078750 ~ 29079026 (-) True G2125814
TU2430657 lncRNA upstream 23326 29297806 ~ 29298278 (-) True G2125888
TU2430656 lncRNA upstream 24039 29298519 ~ 29299176 (-) True G2125887
TU2430707 lncRNA upstream 41674 29316154 ~ 29316379 (-) True G2125937
TU2430654 lncRNA upstream 55061 29329541 ~ 29330605 (-) True LOC110508885
TU2430713 lncRNA upstream 75541 29350021 ~ 29350402 (-) True G2125943
XM_021589758.2 mRNA downstream 1262 29264829 ~ 29269523 (-) True LOC110508879
XM_021589751.2 mRNA downstream 31585 29228842 ~ 29239200 (-) False LOC110508877
XM_021589754.2 mRNA downstream 31585 29228842 ~ 29239200 (-) True LOC110508877
XM_036966624.1 mRNA downstream 38178 29228842 ~ 29232607 (-) False LOC110508877
XM_021589744.2 mRNA downstream 50275 29203564 ~ 29220510 (-) True LOC110508874
XM_021589764.2 mRNA upstream 9436 29283916 ~ 29293424 (-) False LOC110508881
XM_021589762.2 mRNA upstream 9436 29283916 ~ 29293425 (-) True LOC110508881
XM_021589767.2 mRNA upstream 26170 29300650 ~ 29315172 (-) False LOC110508883
XM_036966977.1 mRNA upstream 26170 29300650 ~ 29315173 (-) True LOC110508883
XM_036965899.1 mRNA upstream 46257 29320737 ~ 29325942 (-) False LOC110508885
TU2430565 other downstream 147043 29118684 ~ 29123742 (-) True LOC118944842
TU2430562 other downstream 192041 29078039 ~ 29078744 (-) True G2125813
TU2430463 other downstream 384931 28885468 ~ 28885854 (-) True G2125723
TU2429949 other downstream 578315 28692139 ~ 28692470 (-) True G2125290
TU2429926 other downstream 607359 28662708 ~ 28663426 (-) True G2125270
TU2432085 other upstream 1126733 30401213 ~ 30401807 (-) True LOC110508917
TU2432121 other upstream 1159955 30434435 ~ 30434854 (-) True G2127177
TU2432439 other upstream 1279109 30553589 ~ 30555187 (-) True G2127455
TU2432521 other upstream 1430605 30705085 ~ 30706545 (-) True LOC110508928
TU2433286 other upstream 1969611 31244091 ~ 31244692 (-) True G2128216

Expression Profile